ggKbase home page

L2_039_362G1_scaffold_617

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_362G1_scaffold_617_1
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(1..498)
DNA (498bp) protein (166aa)
Penicillin-binding protein, transpeptidase domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAF2_9FIRM
Penicillin-binding protein, transpeptidase domain protein {ECO:0000313|EMBL:EEC90248.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Cell division protein FtsI/penicillin-binding protein 2
L2_039_362G1_scaffold_617_2
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

562..1611
DNA (1050bp) protein (350aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAF1_9FIRM
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
L2_039_362G1_scaffold_617_3
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(1618..2457)
DNA (840bp) protein (280aa)
Probable endonuclease 4 {ECO:0000256|HAMAP-Rule:MF_00152}; EC=3.1.21.2 {ECO:0000256|HAMAP-Rule:MF_00152};; Endodeoxyribonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; Endonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Probable endonuclease 4 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAF0_9FIRM
endonuclease IV
L2_039_362G1_scaffold_617_4
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(2454..3776)
DNA (1323bp) protein (441aa)
DEAD/DEAH box helicase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAE9_9FIRM
DEAD/DEAH box helicase {ECO:0000313|EMBL:EEC90262.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
ATP-dependent RNA helicase
L2_039_362G1_scaffold_617_5
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

3858..4757
DNA (900bp) protein (300aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAE8_9FIRM
L2_039_362G1_scaffold_617_6
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(4742..5395)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAE7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90260.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
trmK; tRNA (adenine(22)-N(1))-methyltransferase
L2_039_362G1_scaffold_617_7
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(5395..6651)
DNA (1257bp) protein (419aa)
RNA polymerase sigma factor SigA n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAE6_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
RNA polymerase, sigma 70 subunit, RpoD
L2_039_362G1_scaffold_617_8
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(6623..8392)
DNA (1770bp) protein (590aa)
DNA primase {ECO:0000256|SAAS:SAAS00051044}; EC=2.7.7.- {ECO:0000256|SAAS:SAAS00051045};; Flags: Fragment;; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
DNA primase (Fragment) n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAE4_9FIRM
dnaG; DNA primase
L2_039_362G1_scaffold_617_9
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(8392..9822)
DNA (1431bp) protein (477aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
glycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAE3_9FIRM
L2_039_362G1_scaffold_617_10
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(9963..10379)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAE2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90288.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L2_039_362G1_scaffold_617_11
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(10379..11101)
DNA (723bp) protein (241aa)
DNA repair protein RecO n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAE1_9FIRM
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
DNA repair protein RecO
L2_039_362G1_scaffold_617_12
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(11091..11999)
DNA (909bp) protein (303aa)
GTPase Era n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAE0_9FIRM
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
GTP-binding protein Era
L2_039_362G1_scaffold_617_13
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(12012..12209)
DNA (198bp) protein (66aa)
Prokaryotic diacylglycerol kinase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAD9_9FIRM
Prokaryotic diacylglycerol kinase {ECO:0000313|EMBL:EEC90285.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
diacylglycerol kinase
L2_039_362G1_scaffold_617_14
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(12340..12972)
DNA (633bp) protein (211aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Endoribonuclease YbeY n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAD8_9FIRM
conserved hypothetical protein TIGR00043
L2_039_362G1_scaffold_617_15
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(13097..14104)
DNA (1008bp) protein (336aa)
Catabolite control protein A n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAD7_9FIRM
Catabolite control protein A {ECO:0000313|EMBL:EEC90283.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
transcriptional regulator, LacI family
L2_039_362G1_scaffold_617_16
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(14107..14649)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAD6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90282.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_362G1_scaffold_617_17
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(14642..14992)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAD5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90281.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_362G1_scaffold_617_18
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15256..15678)
DNA (423bp) protein (141aa)
arsC; arsenate reductase (EC:1.20.4.1)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:215 RepID=R6EJY6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA96991.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
Displaying 18 items

View Taxonomy