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L2_039_362G1_scaffold_668

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_362G1_scaffold_668_1
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1..939
DNA (939bp) protein (313aa)
Leucine Rich Repeat protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7U0_9FIRM
Leucine Rich Repeat protein {ECO:0000313|EMBL:EEC91137.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Leucine Rich Repeat.
L2_039_362G1_scaffold_668_2
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1040..1456
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7T6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC91192.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L2_039_362G1_scaffold_668_3
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1440..1754
DNA (315bp) protein (105aa)
Transcriptional regulator, PadR family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7T5_9FIRM
Transcriptional regulator, PadR family {ECO:0000313|EMBL:EEC91191.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
transcriptional regulator, PadR family
L2_039_362G1_scaffold_668_4
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1756..2643
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7T4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC91190.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Predicted membrane protein
L2_039_362G1_scaffold_668_5
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2636..3106
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7T3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC91189.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_362G1_scaffold_668_6
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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3162..3305
DNA (144bp) protein (48aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7T2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC91188.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_362G1_scaffold_668_7
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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3302..4897
DNA (1596bp) protein (532aa)
ABC1 family protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7T1_9FIRM
ABC1 family protein {ECO:0000313|EMBL:EEC91187.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Predicted unusual protein kinase
L2_039_362G1_scaffold_668_8
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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4909..5403
DNA (495bp) protein (165aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7T0_9FIRM
L2_039_362G1_scaffold_668_9
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

5385..6299
DNA (915bp) protein (305aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.12 5.4.99.-)
Pseudouridine synthase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7S9_9FIRM
L2_039_362G1_scaffold_668_10
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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6299..6778
DNA (480bp) protein (160aa)
Deoxycytidylate deaminase (EC:3.5.4.12)
Cytidine and deoxycytidylate deaminase zinc-binding region n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7S8_9FIRM
Cytidine and deoxycytidylate deaminase zinc-binding region {ECO:0000313|EMBL:EEC91184.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_362G1_scaffold_668_11
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

6811..7290
DNA (480bp) protein (160aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7S7_9FIRM
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EEC91183.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
diguanylate cyclase (GGDEF) domain
L2_039_362G1_scaffold_668_12
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(7327..8175)
DNA (849bp) protein (283aa)
Ribonuclease HIII {ECO:0000256|HAMAP-Rule:MF_00053, ECO:0000256|SAAS:SAAS00088219}; Short=RNase HIII {ECO:0000256|HAMAP-Rule:MF_00053};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00053, ECO:0000256|SAAS:SAAS00088223};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Ribonuclease HIII n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7S6_9FIRM
rnhC; ribonuclease HIII
L2_039_362G1_scaffold_668_13
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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8221..10551
DNA (2331bp) protein (777aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Endonuclease MutS2 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7S5_9FIRM
mutS2; DNA mismatch repair protein MutS2
L2_039_362G1_scaffold_668_14
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

10560..12317
DNA (1758bp) protein (586aa)
UvrABC system protein C n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7S4_9FIRM
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Excinuclease ABC subunit C
L2_039_362G1_scaffold_668_15
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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12335..13393
DNA (1059bp) protein (353aa)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7S3_9FIRM
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:EEC91179.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
D-alanyl-D-alanine carboxypeptidase
L2_039_362G1_scaffold_668_16
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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13402..13869
DNA (468bp) protein (156aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Phosphodiesterase family protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7S2_9FIRM
phosphoesterase, MJ0936 family
L2_039_362G1_scaffold_668_17
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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13853..14560
DNA (708bp) protein (236aa)
Bacterial transferase hexapeptide repeat protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7S1_9FIRM
Bacterial transferase hexapeptide repeat protein {ECO:0000313|EMBL:EEC91177.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L2_039_362G1_scaffold_668_18
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

14613..15089
DNA (477bp) protein (159aa)
Transglycosylase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7S0_9FIRM
Transglycosylase {ECO:0000313|EMBL:EEC91176.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Transglycosylase.
Displaying 18 items

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