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L2_039_362G1_scaffold_837

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_362G1_scaffold_837_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..736)
DNA (735bp) protein (245aa)
Transposase, IS605 OrfB family n=2 Tax=Clostridium difficile RepID=T4L1N2_CLODI
Transposase, IS605 OrfB family {ECO:0000313|EMBL:EQG74158.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
transposase-like protein b
L2_039_362G1_scaffold_837_2
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(769..1161)
DNA (393bp) protein (131aa)
Transposase-like protein (Fragment) n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CE05_9FIRM
Transposase-like protein {ECO:0000313|EMBL:EEC89004.1}; Flags: Fragment;; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
transposase IS200-family protein
L2_039_362G1_scaffold_837_3
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(1256..1606)
DNA (351bp) protein (117aa)
Uncharacterized protein (Fragment) n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDY1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89014.1}; Flags: Fragment;; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_362G1_scaffold_837_4
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(1690..3837)
DNA (2148bp) protein (716aa)
Tex-like protein N-terminal domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDY2_9FIRM
Tex-like protein N-terminal domain protein {ECO:0000313|EMBL:EEC89015.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Transcriptional accessory protein
L2_039_362G1_scaffold_837_5
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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4234..4668
DNA (435bp) protein (145aa)
LytTr DNA-binding domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDY5_9FIRM
LytTr DNA-binding domain protein {ECO:0000313|EMBL:EEC89018.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
LytR/AlgR family response regulator
L2_039_362G1_scaffold_837_6
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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4665..5333
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDY6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89019.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L2_039_362G1_scaffold_837_7
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(5343..5717)
DNA (375bp) protein (125aa)
Toxin-antitoxin system, antitoxin component, HicB family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDY7_9FIRM
Toxin-antitoxin system, antitoxin component, HicB family {ECO:0000313|EMBL:EEC89020.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L2_039_362G1_scaffold_837_8
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(5662..6054)
DNA (393bp) protein (131aa)
Toxin-antitoxin system, toxin component, HicA family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDY8_9FIRM
Toxin-antitoxin system, toxin component, HicA family {ECO:0000313|EMBL:EEC89021.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hicA; HicA family toxin-antitoxin system
L2_039_362G1_scaffold_837_9
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(6091..7464)
DNA (1374bp) protein (458aa)
MATE efflux family protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDY9_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EEC89022.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
putative efflux protein, MATE family
L2_039_362G1_scaffold_837_10
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(7477..8343)
DNA (867bp) protein (289aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
methionine aminopeptidase, type I (EC:3.4.11.18)
Methionine aminopeptidase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDZ0_9FIRM
L2_039_362G1_scaffold_837_11
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(8439..9008)
DNA (570bp) protein (190aa)
Rubredoxin n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDZ1_9FIRM
Rubredoxin {ECO:0000313|EMBL:EEC89024.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
ferredoxin hydrogenase
L2_039_362G1_scaffold_837_12
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(9106..9954)
DNA (849bp) protein (283aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Release factor glutamine methyltransferase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDZ2_9FIRM
prmC; protein-(glutamine-N5) methyltransferase
L2_039_362G1_scaffold_837_13
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(9954..11030)
DNA (1077bp) protein (359aa)
Peptide chain release factor 1 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDZ3_9FIRM
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
bacterial peptide chain release factor 1 (bRF-1)
L2_039_362G1_scaffold_837_14
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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11189..12574
DNA (1386bp) protein (462aa)
Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDZ4_9FIRM
Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase {ECO:0000313|EMBL:EEC89027.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
putative endo-beta-N-acetylglucosaminidase
Displaying 14 items

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