ggKbase home page

L2_040_000G1_scaffold_16

Search features with annotation key words

Displaying items 1-30 of 321 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_000G1_scaffold_16_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

143..394
DNA (252bp) protein (84aa)
Uncharacterized protein n=6 Tax=Bifidobacterium bifidum RepID=I3WKI1_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI44105.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_040_000G1_scaffold_16_2
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(527..1306)
DNA (780bp) protein (260aa)
chromate reductase/NADPH-dependent FMN reductase/Oxygen-insensitive NADPH nitroreductase (EC:1.6.99.3)
Nitroreductase n=2 Tax=Bifidobacterium RepID=R6GG53_9BIFI
Nitroreductase {ECO:0000313|EMBL:CDB23405.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_040_000G1_scaffold_16_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1564..1980)
DNA (417bp) protein (139aa)
Uncharacterized protein n=5 Tax=Bifidobacterium bifidum RepID=E4VAY9_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKF16159.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_040_000G1_scaffold_16_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2065..2754
DNA (690bp) protein (230aa)
Phosphoglycerate mutase family protein n=5 Tax=Bifidobacterium RepID=E3ERE4_BIFBS
phoE; putative phosphoglycerate mutase
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:ADO53948.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_000G1_scaffold_16_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3038..4060)
DNA (1023bp) protein (341aa)
Transcriptional regulator, LacI family n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DSS2_BIFBI
LacI-type transcriptional regulator {ECO:0000313|EMBL:KFI44100.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
LacI-type transcriptional regulator
L2_040_000G1_scaffold_16_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4393..6525
DNA (2133bp) protein (711aa)
alkaline phosphatase (EC:3.1.3.1)
Alkaline phosphatase n=2 Tax=Bifidobacterium bifidum RepID=E4P0G4_BIFBP
Alkaline phosphatase {ECO:0000313|EMBL:BAQ98995.1}; Alkaline phosphatase family protein {ECO:0000313|EMBL:ERI82790.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_040_000G1_scaffold_16_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6903..8786
DNA (1884bp) protein (628aa)
Chaperone protein DnaK n=7 Tax=Bifidobacterium bifidum RepID=E3ERE0_BIFBS
dnaK; chaperone protein dnaK
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_040_000G1_scaffold_16_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8789..9493
DNA (705bp) protein (235aa)
Protein GrpE n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I5P4_BIFBI
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
grpE; molecular chaperone GrpE
L2_040_000G1_scaffold_16_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9952..10959
DNA (1008bp) protein (336aa)
DnaJ domain protein n=4 Tax=Bifidobacterium bifidum RepID=E4VAZ8_BIFBI
dnaJ1; chaperone protein dnaJ
Chaperone protein dnaJ {ECO:0000313|EMBL:EKF15027.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_040_000G1_scaffold_16_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11053..11565
DNA (513bp) protein (171aa)
Putative heat shock protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MSD1_BIFBI
hspR; putative heat shock protein
Putative heat shock protein {ECO:0000313|EMBL:EKF15028.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_040_000G1_scaffold_16_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11921..14413
DNA (2493bp) protein (831aa)
BNR/Asp-box repeat protein n=2 Tax=Bifidobacterium bifidum RepID=E4VB00_BIFBI
BNR/Asp-box repeat protein {ECO:0000313|EMBL:EFR50765.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
sialidase
L2_040_000G1_scaffold_16_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14725..20073
DNA (5349bp) protein (1783aa)
sialidase n=1 Tax=Bifidobacterium bifidum RepID=UPI0001976FF0
sialidase
Sialidase {ECO:0000313|EMBL:ADO53938.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_000G1_scaffold_16_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20306..21091
DNA (786bp) protein (262aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQQ3_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53937.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_000G1_scaffold_16_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21590..22288)
DNA (699bp) protein (233aa)
SNARE-like domain protein n=2 Tax=Bifidobacterium bifidum RepID=E4VB04_BIFBI
Putative membrane-associated protein {ECO:0000313|EMBL:KFI44090.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
L2_040_000G1_scaffold_16_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22558..23559
DNA (1002bp) protein (334aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Tetrapyrrole (Corrin/Porphyrin) methylase family protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQQ1_BIFBS
Tetrapyrrole (Corrin/Porphyrin) methylase family protein
L2_040_000G1_scaffold_16_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23561..23992)
DNA (432bp) protein (144aa)
Uncharacterized protein n=3 Tax=Bifidobacterium RepID=E4VB06_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI44088.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_040_000G1_scaffold_16_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24090..24920)
DNA (831bp) protein (277aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=I3WKG3_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL05376.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_040_000G1_scaffold_16_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


25070..26932
DNA (1863bp) protein (621aa)
methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00098}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Methionine--tRNA ligase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P0F2_BIFBP
L2_040_000G1_scaffold_16_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27127..27642
DNA (516bp) protein (172aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=U2CFI1_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI82773.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_040_000G1_scaffold_16_20
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28408..28557)
DNA (150bp) protein (50aa)
Uncharacterized protein n=5 Tax=Bifidobacterium RepID=E4VB11_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB22237.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_040_000G1_scaffold_16_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28862..30316
DNA (1455bp) protein (485aa)
Sugar-binding domain protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DSQ6_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI44084.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
L2_040_000G1_scaffold_16_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30492..31451
DNA (960bp) protein (320aa)
Hydrolase, TatD family n=3 Tax=Bifidobacterium bifidum RepID=E4VB14_BIFBI
Hydrolase, TatD family {ECO:0000313|EMBL:EFR50779.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
tadD; sec-independent protein
L2_040_000G1_scaffold_16_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31615..34077
DNA (2463bp) protein (821aa)
Probable potassium transport system protein kup n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2LDU6_BIFBI
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
K+ transporter
L2_040_000G1_scaffold_16_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35297..36163
DNA (867bp) protein (289aa)
Putative uncharacterized protein n=4 Tax=Bifidobacterium bifidum RepID=E3EQP1_BIFBS
putative glutamine amido transferase
Putative glutamine amido transferase {ECO:0000313|EMBL:AFL05367.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_040_000G1_scaffold_16_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36367..37113
DNA (747bp) protein (249aa)
Metal dependent phosphohydrolase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WKF3_BIFBI
metal dependent phosphohydrolase
Metal dependent phosphohydrolase {ECO:0000313|EMBL:AFL05366.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_040_000G1_scaffold_16_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(37191..38510)
DNA (1320bp) protein (440aa)
putative ribose/galactose/methyl galactosideimport ATP-binding protein (EC:3.6.3.17)
Putative ribose/galactose/methyl galactosideimport ATP-binding protein {ECO:0000313|EMBL:AFL05365.1}; EC=3.6.3.17 {ECO:0000313|EMBL:AFL05365.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Putative ribose/galactose/methyl galactosideimport ATP-binding protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WKF2_BIFBI
L2_040_000G1_scaffold_16_27
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(38507..39940)
DNA (1434bp) protein (478aa)
SalY-type ABC antimicrobial peptide transportsystem permease component n=5 Tax=Bifidobacterium RepID=I3WKF1_BIFBI
SalY-type ABC antimicrobial peptide transportsystem permease component
Uncharacterized protein {ECO:0000313|EMBL:CDB22247.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_040_000G1_scaffold_16_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

40421..42586
DNA (2166bp) protein (722aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VB21_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR50786.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
methyl-accepting chemotaxis protein
L2_040_000G1_scaffold_16_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

43752..44846
DNA (1095bp) protein (365aa)
Riboflavin-specific deaminase n=4 Tax=Bifidobacterium RepID=K2MFF4_BIFBI
riboflavin-specific deaminase
Riboflavin-specific deaminase {ECO:0000313|EMBL:EKF15972.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_040_000G1_scaffold_16_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(44970..45869)
DNA (900bp) protein (300aa)
Thiazole synthase {ECO:0000256|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000256|HAMAP-Rule:MF_00443};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Thiazole synthase n=2 Tax=Bifidobacterium bifidum RepID=K2M1Y5_BIFBI
thiG; thiazole biosynthesis protein
Displaying items 1-30 of 321 in total

View Taxonomy