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L2_040_000M1_scaffold_123

Search features with annotation key words

Displaying items 1-30 of 200 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_000M1_scaffold_123_1
Bacteroides faecis CAG:32, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(212..1858)
-----------------
DNA (1647bp)
protein (549aa)
Transcriptional regulator n=1 Tax=Bacteroides faecis CAG:32 RepID=R6UV33_9BACE
Transcriptional regulator {ECO:0000313|EMBL:CDC88360.1}; TaxID=1263044 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides faecis CAG:32.;"
transcriptional regulator
L2_040_000M1_scaffold_123_2
Bacteroides faecis CAG:32, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1929..2306)
-----------------
DNA (378bp)
protein (126aa)
Putative transcriptional regulator n=2 Tax=Bacteroides RepID=R6V8I5_9BACE
Putative transcriptional regulator {ECO:0000313|EMBL:CDC88361.1}; TaxID=1263044 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides faecis CAG:32.;"
transcriptional regulator
L2_040_000M1_scaffold_123_3
Bacteroides faecis CAG:32, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2517..3836)
-----------------
DNA (1320bp)
protein (440aa)
Na(+)/H(+) antiporter NhaA n=2 Tax=Bacteroides RepID=R6W232_9BACE
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=1263044 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides faecis CAG:32.;"
Na+/H+ antiporter 1
L2_040_000M1_scaffold_123_4
Bacteroides faecis CAG:32, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3882..5060)
-----------------
DNA (1179bp)
protein (393aa)
Na+/H+ exchange protein n=1 Tax=Bacteroides faecis CAG:32 RepID=R6URC3_9BACE
Na+/H+ exchange protein {ECO:0000313|EMBL:CDC88363.1}; TaxID=1263044 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides faecis CAG:32.;"
Na+/H+ exchange protein
L2_040_000M1_scaffold_123_5
Bacteroides sp. 1_1_6, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5202..6983)
-----------------
DNA (1782bp)
protein (594aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=469586 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 1_1_6.;"
GTP-binding protein LepA n=1 Tax=Bacteroides faecis RepID=UPI000262F44F
GTP-binding protein LepA
L2_040_000M1_scaffold_123_6
Bacteroides thetaiotaomicron, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7113..7313)
-----------------
DNA (201bp)
protein (67aa)
Uncharacterized protein n=5 Tax=Bacteroides RepID=E7MCA2_BACTN
Uncharacterized protein {ECO:0000313|EMBL:EOS02763.1}; TaxID=1235785 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides thetaiotaomicron dnLKV9.;"
hypothetical protein
L2_040_000M1_scaffold_123_7
Bacteroides thetaiotaomicron, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7350..7874)
-----------------
DNA (525bp)
protein (175aa)
hypothetical protein n=1 Tax=Bacteroides faecis RepID=UPI000262F450
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAO75738.1}; TaxID=226186 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC; 10582 / E50 / VPI-5482).;"
L2_040_000M1_scaffold_123_8
Bacteroides faecis CAG:32, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7951..8358
-----------------
DNA (408bp)
protein (136aa)
Secondary thiamine-phosphate synthase enzyme n=1 Tax=Bacteroides faecis CAG:32 RepID=R6V1T5_9BACE
Secondary thiamine-phosphate synthase enzyme {ECO:0000313|EMBL:CDC88229.1}; TaxID=1263044 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides faecis CAG:32.;"
hypothetical protein
L2_040_000M1_scaffold_123_9
Bacteroides thetaiotaomicron CAG:40, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8402..9166)
-----------------
DNA (765bp)
protein (255aa)
exodeoxyribonuclease III n=1 Tax=Bacteroides faecis RepID=UPI000262F452
Exodeoxyribonuclease III {ECO:0000313|EMBL:CDE81243.1}; TaxID=1263054 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides thetaiotaomicron CAG:40.;"
exodeoxyribonuclease
L2_040_000M1_scaffold_123_10
Bacteroides sp. 1_1_6, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9197..10453)
-----------------
DNA (1257bp)
protein (419aa)
Mn2+ and Fe2+ transport protein n=3 Tax=Bacteroides RepID=Q8AA36_BACTN
Mn2+ and Fe2+ transport protein
Metal ion (Mn2+/Fe2+) transporter (Nramp) family metal ion transporter {ECO:0000313|EMBL:EES70706.2}; TaxID=469586 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 1_1_6.;"
L2_040_000M1_scaffold_123_11
Bacteroides faecis CAG:32, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10616..10861)
-----------------
DNA (246bp)
protein (82aa)
Uncharacterized protein n=1 Tax=Bacteroides faecis CAG:32 RepID=R6VZU1_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDC87562.1}; TaxID=1263044 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides faecis CAG:32.;"
hypothetical protein
L2_040_000M1_scaffold_123_12
Bacteroides sp. 1_1_14, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10869..11606)
-----------------
DNA (738bp)
protein (246aa)
Probable transcriptional regulatory protein BT_0627 n=4 Tax=Bacteroides RepID=Y627_BACTN
hypothetical protein
Probable transcriptional regulatory protein HMPREF9007_02004 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=469585 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 1_1_14.;"
L2_040_000M1_scaffold_123_13
Bacteroides thetaiotaomicron, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(11642..14104)
-----------------
DNA (2463bp)
protein (821aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1235785 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides thetaiotaomicron dnLKV9.;"
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
phenylalanyl-tRNA synthetase subunit beta n=1 Tax=Bacteroides faecis RepID=UPI000262F456
L2_040_000M1_scaffold_123_14
Bacteroides sp. 1_1_14, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14489..16042)
-----------------
DNA (1554bp)
protein (518aa)
replicative DNA helicase n=1 Tax=Bacteroides faecis RepID=UPI000262F457
DNA helicase
Replicative DNA helicase {ECO:0000313|EMBL:EFI04345.1}; TaxID=469585 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 1_1_14.;"
L2_040_000M1_scaffold_123_15
Bacteroides faecis CAG:32, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16241..17065
-----------------
DNA (825bp)
protein (275aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1263044 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides faecis CAG:32.;"
4-diphosphocytidyl-2C-methyl-D-erythritol kinase n=1 Tax=Bacteroides faecis RepID=UPI000262F458
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
L2_040_000M1_scaffold_123_16
Bacteroides faecis CAG:32, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17298..18272)
-----------------
DNA (975bp)
protein (325aa)
Putative UDP-glucose 4-epimerase n=1 Tax=Bacteroides faecis CAG:32 RepID=R6UY19_9BACE
Putative UDP-glucose 4-epimerase {ECO:0000313|EMBL:CDC90758.1}; TaxID=1263044 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides faecis CAG:32.;"
UDP-glucose 4-epimerase
L2_040_000M1_scaffold_123_17
Bacteroides faecis CAG:32, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18532..19104)
-----------------
DNA (573bp)
protein (191aa)
Na+-transporting NADH:ubiquinone oxidoreductase Electron transport complex protein rnfA n=1 Tax=Bacteroides faecis CAG:32 RepID=R6W963_9BACE
Electron transport complex subunit A {ECO:0000256|HAMAP-Rule:MF_00459}; TaxID=1263044 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides faecis CAG:32.;"
Na+-transporting NADH:ubiquinone oxidoreductase electron transport complex protein RnfA
L2_040_000M1_scaffold_123_18
Bacteroides faecis CAG:32, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19127..19693)
-----------------
DNA (567bp)
protein (189aa)
NADH:ubiquinone oxidoreductase Na(+)-translocating D subunit n=2 Tax=Bacteroides RepID=R6VFA7_9BACE
Electron transport complex subunit E {ECO:0000256|HAMAP-Rule:MF_00478}; TaxID=1263044 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides faecis CAG:32.;"
electron transport complex protein RsxE
L2_040_000M1_scaffold_123_19
Bacteroides faecis CAG:32, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19729..20412)
-----------------
DNA (684bp)
protein (228aa)
Na+-transporting NADH:ubiquinone oxidoreductase Electron transport complex protein rnfG n=2 Tax=Bacteroides RepID=R6V195_9BACE
Electron transport complex subunit G {ECO:0000256|HAMAP-Rule:MF_00479}; TaxID=1263044 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides faecis CAG:32.;"
Na+-transporting NADH:ubiquinone oxidoreductase electron transport complex protein RnfG
L2_040_000M1_scaffold_123_20
Bacteroides faecis CAG:32, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20439..21431)
-----------------
DNA (993bp)
protein (331aa)
Electron transport complex rnfabcdge type D subunit n=1 Tax=Bacteroides faecis CAG:32 RepID=R6V8T9_9BACE
Electron transport complex subunit D {ECO:0000256|HAMAP-Rule:MF_00462}; TaxID=1263044 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides faecis CAG:32.;"
Na+-transporting NADH:ubiquinone oxidoreductase electron transport complex protein RnfD
L2_040_000M1_scaffold_123_21
Bacteroides thetaiotaomicron, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21438..22775)
-----------------
DNA (1338bp)
protein (446aa)
electron transporter RnfC n=1 Tax=Bacteroides faecis RepID=UPI000262F45E
Na+-transporting NADH:ubiquinone oxidoreductase electron transport complex protein RnfC
Electron transport complex subunit C {ECO:0000256|HAMAP-Rule:MF_00461}; TaxID=226186 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC; 10582 / E50 / VPI-5482).;"
L2_040_000M1_scaffold_123_22
Bacteroides thetaiotaomicron, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22789..23643)
-----------------
DNA (855bp)
protein (285aa)
ferredoxin n=1 Tax=Bacteroides faecis RepID=UPI000262F45F
ferredoxin
Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfB {ECO:0000313|EMBL:AAO75724.1}; TaxID=226186 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC; 10582 / E50 / VPI-5482).;"
L2_040_000M1_scaffold_123_23
Bacteroides thetaiotaomicron, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23650..24075)
-----------------
DNA (426bp)
protein (142aa)
hypothetical protein n=1 Tax=Bacteroides faecis RepID=UPI000262F460
Uncharacterized protein {ECO:0000313|EMBL:EOS02746.1}; TaxID=1235785 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides thetaiotaomicron dnLKV9.;"
hypothetical protein
L2_040_000M1_scaffold_123_24
Bacteroides thetaiotaomicron, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24167..24259)
-----------------
DNA (93bp)
protein (31aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=I0PZY8_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EOS02745.1}; TaxID=1235785 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides thetaiotaomicron dnLKV9.;"
hypothetical protein
L2_040_000M1_scaffold_123_25
Bacteroides sp. 1_1_14, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24362..24739)
-----------------
DNA (378bp)
protein (126aa)
DNA-binding protein n=1 Tax=Bacteroides faecis RepID=UPI000262F461
hypothetical protein
DNA-binding protein {ECO:0000313|EMBL:EFI04335.1}; TaxID=469585 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 1_1_14.;"
L2_040_000M1_scaffold_123_26
Bacteroides sp. 1_1_6, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24895..27312)
-----------------
DNA (2418bp)
protein (806aa)
tyrosine protein kinase n=1 Tax=Bacteroides faecis RepID=UPI000262F462
Capsular exopolysaccharide family protein {ECO:0000313|EMBL:EIC72931.1}; TaxID=469586 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 1_1_6.;"
tyrosine-protein kinase in cps region
L2_040_000M1_scaffold_123_27
Bacteroides sp. 1_1_6, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27325..28122)
-----------------
DNA (798bp)
protein (266aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. 1_1_6 RepID=I0PZM9_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIC72932.1}; TaxID=469586 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 1_1_6.;"
membrane protein involved in polysaccharide export
L2_040_000M1_scaffold_123_28
Bacteroides sp. 1_1_6, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28142..29218)
-----------------
DNA (1077bp)
protein (359aa)
GDP-L-fucose synthase {ECO:0000256|HAMAP-Rule:MF_00956}; EC=1.1.1.271 {ECO:0000256|HAMAP-Rule:MF_00956};; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase {ECO:0000256|HAMAP-Rule:MF_00956}; TaxID=469586 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 1_1_6.;"
GDP-L-fucose synthase (EC:1.1.1.271)
GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase n=1 Tax=Bacteroides faecis RepID=UPI000262F463
L2_040_000M1_scaffold_123_29
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29221..30318)
-----------------
DNA (1098bp)
protein (366aa)
GDP-mannose 4,6-dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; EC=4.2.1.47 {ECO:0000256|HAMAP-Rule:MF_00955};; GDP-D-mannose dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
GDP-mannose 4,6-dehydratase (EC:4.2.1.47)
GDP-mannose 4,6-dehydratase n=1 Tax=Bacteroides faecis RepID=UPI000262F464
L2_040_000M1_scaffold_123_30
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30514..30756)
-----------------
DNA (243bp)
protein (81aa)
hypothetical protein n=1 Tax=Bacteroides faecis RepID=UPI000262F465
Uncharacterized protein {ECO:0000313|EMBL:EDM19847.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
Displaying items 1-30 of 200 in total

View Taxonomy