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L2_040_000M1_scaffold_344

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Displaying items 1-30 of 54 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_000M1_scaffold_344_1
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(135..1211)
DNA (1077bp) protein (359aa)
Peptide chain release factor 1 n=2 Tax=Roseburia RepID=C0FN40_9FIRM
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
bacterial peptide chain release factor 1 (bRF-1)
L2_040_000M1_scaffold_344_2
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1317..2144)
DNA (828bp) protein (276aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (EC:2.1.1.-)
Release factor glutamine methyltransferase n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HXG1_9FIRM
L2_040_000M1_scaffold_344_3
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2162..3082)
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HY72_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29446.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Predicted metal-dependent enzyme
L2_040_000M1_scaffold_344_4
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(3205..3408)
DNA (204bp) protein (68aa)
50S ribosomal protein L31 n=2 Tax=Roseburia RepID=C0FN35_9FIRM
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
LSU ribosomal protein L31P
L2_040_000M1_scaffold_344_5
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3610..5031)
DNA (1422bp) protein (474aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Transcription termination factor Rho n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FN34_9FIRM
transcription termination factor Rho
L2_040_000M1_scaffold_344_6
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5230..6384
DNA (1155bp) protein (385aa)
Malic enzyme, NAD binding domain protein n=2 Tax=Roseburia RepID=C0FN33_9FIRM
Malic enzyme, NAD binding domain protein {ECO:0000313|EMBL:EEG96104.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
malate dehydrogenase
L2_040_000M1_scaffold_344_7
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6387..7325
DNA (939bp) protein (313aa)
Radical SAM protein, TIGR01212 family n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FN32_9FIRM
Radical SAM protein, TIGR01212 family {ECO:0000313|EMBL:EEG96103.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
radical SAM protein, TIGR01212 family
L2_040_000M1_scaffold_344_8
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7613..8128
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HI78_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29440.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L2_040_000M1_scaffold_344_9
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8144..8758
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HMP1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29439.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
L2_040_000M1_scaffold_344_10
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8808..9143)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HIP3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29438.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L2_040_000M1_scaffold_344_11
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9231..9521)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HXF5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29437.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
L2_040_000M1_scaffold_344_12
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9751..10017
DNA (267bp) protein (89aa)
Addiction module antitoxin RelB/DinJ family n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HY59_9FIRM
Addiction module antitoxin RelB/DinJ family {ECO:0000313|EMBL:CCY29436.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
addiction module antitoxin, RelB/DinJ family
L2_040_000M1_scaffold_344_13
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10017..10277
DNA (261bp) protein (87aa)
Addiction module toxin, Txe/YoeB family n=2 Tax=Roseburia RepID=C0FN21_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29435.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
toxin-antitoxin system, toxin component, Txe/YoeB family
L2_040_000M1_scaffold_344_14
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10458..11951)
DNA (1494bp) protein (498aa)
glutamate synthase (NADH) small subunit (EC:1.4.1.13 1.4.1.14)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HMN7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29434.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
L2_040_000M1_scaffold_344_15
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11992..16590)
DNA (4599bp) protein (1533aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HIN8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29433.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
glutamate synthase (ferredoxin)
L2_040_000M1_scaffold_344_16
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17138..17704)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FN05_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG96076.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L2_040_000M1_scaffold_344_17
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17753..18421)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HY53_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29431.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L2_040_000M1_scaffold_344_18
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18613..19332)
DNA (720bp) protein (240aa)
LytTr DNA-binding domain protein n=2 Tax=Roseburia RepID=C0FN03_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29430.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
DNA-binding response regulator
L2_040_000M1_scaffold_344_19
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19429..20202)
DNA (774bp) protein (258aa)
CAAX amino terminal protease family protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FN02_9FIRM
CAAX amino terminal protease family protein {ECO:0000313|EMBL:EEG96073.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
CAAX amino terminal protease family protein
L2_040_000M1_scaffold_344_20
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20219..20875)
DNA (657bp) protein (219aa)
5'-nucleotidase {ECO:0000313|EMBL:EEG96072.1}; EC=3.1.3.5 {ECO:0000313|EMBL:EEG96072.1};; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
5'-nucleotidase n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FN01_9FIRM
putative phosphatase
L2_040_000M1_scaffold_344_21
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20877..21701)
DNA (825bp) protein (275aa)
dihydroneopterin aldolase/2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:4.1.2.25)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HXE5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29427.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
L2_040_000M1_scaffold_344_22
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21785..22594)
DNA (810bp) protein (270aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Dihydropteroate synthase n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FMZ9_9FIRM
hypothetical protein
L2_040_000M1_scaffold_344_23
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22717..23082)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZGP7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFQ07642.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
hypothetical protein
L2_040_000M1_scaffold_344_24
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23076..24311)
DNA (1236bp) protein (412aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZGP6_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EFQ07641.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
L2_040_000M1_scaffold_344_25
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24313..25770)
DNA (1458bp) protein (486aa)
glpA; NAD(FAD)-dependent dehydrogenase (EC:1.1.5.3)
NAD(FAD)-dependent dehydrogenase n=1 Tax=Clostridium sp. CAG:7 RepID=R5J576_9CLOT
NAD(FAD)-dependent dehydrogenase {ECO:0000313|EMBL:CCY44052.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
L2_040_000M1_scaffold_344_26
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25928..26614)
DNA (687bp) protein (229aa)
Transcriptional regulator GntR family n=1 Tax=Eubacterium sp. CAG:38 RepID=R7HAM4_9FIRM
Transcriptional regulator GntR family {ECO:0000313|EMBL:CDE35237.1}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
hypothetical protein
L2_040_000M1_scaffold_344_27
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26675..27964)
DNA (1290bp) protein (430aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:146 RepID=R5GM52_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY13867.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
TRAP dicarboxylate transporter subunit DctM
L2_040_000M1_scaffold_344_28
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27965..28450)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:146 RepID=R5GMQ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY13866.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
TRAP-type C4-dicarboxylate transport system, small permease component
L2_040_000M1_scaffold_344_29
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28463..29491)
DNA (1029bp) protein (343aa)
Dicarboxylate:H+ TRAP-T family tripartite ATP-independent transporter binding protein n=1 Tax=Eubacterium sp. CAG:146 RepID=R5G972_9FIRM
Dicarboxylate:H+ TRAP-T family tripartite ATP-independent transporter binding protein {ECO:0000313|EMBL:CCY13865.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
TRAP dicarboxylate transporter subunit DctP
L2_040_000M1_scaffold_344_30
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29776..30330)
DNA (555bp) protein (185aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase 1 n=2 Tax=Roseburia RepID=C0FMZ8_9FIRM
Displaying items 1-30 of 54 in total

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