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L2_040_010G1_scaffold_51

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_010G1_scaffold_51_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(652..2907)
DNA (2256bp) protein (752aa)
Export membrane protein SecD n=17 Tax=Staphylococcus epidermidis RepID=D4FIH9_STAEP
Export membrane protein SecD {ECO:0000313|EMBL:EFE59898.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
secD; export membrane protein SecD
L2_040_010G1_scaffold_51_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3246..3506)
DNA (261bp) protein (87aa)
Preprotein translocase, YajC subunit n=70 Tax=Staphylococcus epidermidis RepID=Q5HNR3_STAEQ
Preprotein translocase subunit YajC (TC 3.A.5.1.1)
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:EFE59897.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_040_010G1_scaffold_51_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3522..4661)
DNA (1140bp) protein (380aa)
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase {ECO:0000255|HAMAP-Rule:MF_00168}; EC=2.4.2.29 {ECO:0000255|HAMAP-Rule:MF_00168};; Guanine insertion enzyme {ECO:0000255|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000255|HAMAP-Rule:MF_00168}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
Queuine tRNA-ribosyltransferase n=46 Tax=Staphylococcus epidermidis RepID=TGT_STAEQ
L2_040_010G1_scaffold_51_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4682..5746)
DNA (1065bp) protein (355aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=2 Tax=Staphylococcus epidermidis RepID=D4FIH6_STAEP
queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase
L2_040_010G1_scaffold_51_5
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5709..6713)
DNA (1005bp) protein (335aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Holliday junction ATP-dependent DNA helicase RuvB n=46 Tax=Staphylococcus epidermidis RepID=RUVB_STAEQ
Holliday junction DNA helicase RuvB
L2_040_010G1_scaffold_51_6
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6727..7329)
DNA (603bp) protein (201aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Holliday junction ATP-dependent DNA helicase RuvA n=54 Tax=Staphylococcus epidermidis RepID=RUVA_STAEQ
Holliday junction DNA helicase RuvA
L2_040_010G1_scaffold_51_7
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7342..7806)
DNA (465bp) protein (155aa)
UPF0735 ACT domain-containing protein pheB n=1 Tax=Staphylococcus epidermidis M23864:W2(grey) RepID=D4FIH3_STAEP
UPF0735 ACT domain-containing protein pheB {ECO:0000256|HAMAP-Rule:MF_00707}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
hypothetical protein
L2_040_010G1_scaffold_51_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7809..9101)
DNA (1293bp) protein (431aa)
GTPase Obg n=42 Tax=Staphylococcus epidermidis RepID=OBG_STAES
obgE; GTPase ObgE
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_040_010G1_scaffold_51_9
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(9247..9531)
DNA (285bp) protein (95aa)
50S ribosomal protein L27 n=86 Tax=Staphylococcus RepID=RL27_STAEQ
LSU ribosomal protein L27p
50S ribosomal protein L27 {ECO:0000255|HAMAP-Rule:MF_00539}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
L2_040_010G1_scaffold_51_10
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9543..9863)
DNA (321bp) protein (107aa)
Uncharacterized protein n=78 Tax=Staphylococcus epidermidis RepID=Q5HNQ5_STAEQ
Potential ribosomal protein
Uncharacterized protein {ECO:0000313|EMBL:ETJ14777.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
L2_040_010G1_scaffold_51_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(9868..10176)
DNA (309bp) protein (103aa)
50S ribosomal protein L21 n=81 Tax=Staphylococcus epidermidis RepID=RL21_STAEQ
rplU; 50S ribosomal protein L21
50S ribosomal protein L21 {ECO:0000255|HAMAP-Rule:MF_01363}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
L2_040_010G1_scaffold_51_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10298..10819)
DNA (522bp) protein (174aa)
Rod shape-determining protein MreD, putative n=50 Tax=Staphylococcus epidermidis RepID=Q5HNQ3_STAEQ
mreD; rod shape-determining protein MreD
Rod shape-determining protein MreD, putative {ECO:0000313|EMBL:AAW54605.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L2_040_010G1_scaffold_51_13
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10819..11658)
DNA (840bp) protein (280aa)
Cell shape-determining protein MreC n=32 Tax=Staphylococcus epidermidis RepID=C5Q9R1_STAEP
Rod shape-determining protein MreC
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_040_010G1_scaffold_51_14
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12065..12205)
DNA (141bp) protein (47aa)
Uncharacterized protein n=53 Tax=Staphylococcus epidermidis RepID=Q5HNQ1_STAEQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAW54551.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L2_040_010G1_scaffold_51_15
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12289..12774)
DNA (486bp) protein (162aa)
Uncharacterized protein n=51 Tax=Staphylococcus epidermidis RepID=Q5HNQ0_STAEQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFE59884.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_040_010G1_scaffold_51_16
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12939..13118
DNA (180bp) protein (60aa)
Uncharacterized protein n=50 Tax=Staphylococcus epidermidis RepID=Q5HNP9_STAEQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAW54553.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L2_040_010G1_scaffold_51_17
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13182..13847)
DNA (666bp) protein (222aa)
UPF0758 protein SE_1336 n=44 Tax=Staphylococcus epidermidis RepID=Y1336_STAES
DNA repair protein RadC
UPF0758 protein SE_1336; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
L2_040_010G1_scaffold_51_18

Not on your lists

comp(13859..14569)
DNA (711bp) protein (237aa)
Type IV prepilin peptidase n=35 Tax=Staphylococcus epidermidis RepID=Q8CNZ3_STAES
Late competence protein ComC, processing protease
A24 family peptidase {ECO:0000313|EMBL:ETJ18379.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L2_040_010G1_scaffold_51_19
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14753..16018)
DNA (1266bp) protein (422aa)
Bifunctional protein FolC {ECO:0000313|EMBL:EFE59880.1}; EC=6.3.2.17 {ECO:0000313|EMBL:EFE59880.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Folylpolyglutamate synthase/dihydrofolate synthase n=43 Tax=Staphylococcus epidermidis RepID=Q5HNP0_STAEQ
folC; bifunctional FolC family protein
L2_040_010G1_scaffold_51_20
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(16029..18659)
DNA (2631bp) protein (877aa)
Valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Valine--tRNA ligase n=38 Tax=Staphylococcus epidermidis RepID=SYV_STAEQ
L2_040_010G1_scaffold_51_21
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18963..19562
DNA (600bp) protein (200aa)
DNA-3-methyladenine glycosylase I {ECO:0000313|EMBL:EFE59878.1}; EC=3.2.2.20 {ECO:0000313|EMBL:EFE59878.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
DNA-3-methyladenine glycosylase (EC:3.2.2.20)
Methyladenine glycosylase n=1 Tax=Staphylococcus epidermidis VCU123 RepID=H3VVV3_STAEP
L2_040_010G1_scaffold_51_22
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19729..20748)
DNA (1020bp) protein (340aa)
Membrane protein, putative n=40 Tax=Staphylococcus epidermidis RepID=Q5HNN7_STAEQ
hypothetical protein
Putative membrane protein AbrB {ECO:0000313|EMBL:EFE59877.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_040_010G1_scaffold_51_23
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21203..22489)
DNA (1287bp) protein (429aa)
Glutamate-1-semialdehyde aminotransferase (EC:5.4.3.8)
Glutamate-1-semialdehyde 2,1-aminomutase 1 {ECO:0000255|HAMAP-Rule:MF_00375}; Short=GSA 1 {ECO:0000255|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000255|HAMAP-Rule:MF_00375};; Glutamate-1-semialdehyde aminotransferase 1 {ECO:0000255|HAMAP-Rule:MF_00375}; Short=GSA-AT 1 {ECO:0000255|HAMAP-Rule:MF_00375};; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Glutamate-1-semialdehyde 2,1-aminomutase 1 n=42 Tax=Staphylococcus epidermidis RepID=GSA1_STAEQ
L2_040_010G1_scaffold_51_24

Not on your lists

comp(22510..23484)
DNA (975bp) protein (325aa)
hemB; delta-aminolevulinic acid dehydratase (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase n=43 Tax=Staphylococcus epidermidis RepID=HEM2_STAEQ
Delta-aminolevulinic acid dehydratase {ECO:0000313|EMBL:ETJ18385.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L2_040_010G1_scaffold_51_25
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23474..24154)
DNA (681bp) protein (227aa)
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:EFE59874.1}; EC=4.2.1.75 {ECO:0000313|EMBL:EFE59874.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Uroporphyrinogen-III synthase (EC:4.2.1.75)
Uroporphyrinogen-III synthase n=16 Tax=Staphylococcus epidermidis RepID=D4FIF5_STAEP
L2_040_010G1_scaffold_51_26

Not on your lists

comp(24188..25114)
DNA (927bp) protein (309aa)
hemC; porphobilinogen deaminase (EC:2.5.1.61)
Porphobilinogen deaminase n=49 Tax=Staphylococcus epidermidis RepID=HEM3_STAEQ
Porphobilinogen deaminase {ECO:0000313|EMBL:ETJ18387.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L2_040_010G1_scaffold_51_27
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25168..25980)
DNA (813bp) protein (271aa)
HemA concentration negative effector n=41 Tax=Staphylococcus epidermidis RepID=Q8CNY7_STAES
HemX protein, negative effector of steady-state concentration of glutamyl-tRNA reductase
Cytochrome c assembly protein {ECO:0000313|EMBL:EFE59872.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_040_010G1_scaffold_51_28
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26002..27348)
DNA (1347bp) protein (449aa)
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Glutamyl-tRNA reductase n=16 Tax=Staphylococcus epidermidis RepID=D4FIF2_STAEP
hemA; glutamyl-tRNA reductase
L2_040_010G1_scaffold_51_29
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27518..28105)
DNA (588bp) protein (196aa)
Probable GTP-binding protein EngB n=48 Tax=Staphylococcus epidermidis RepID=ENGB_STAEQ
GTP-binding protein EngB
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321, ECO:0000256|SAAS:SAAS00023450}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_040_010G1_scaffold_51_30
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(28217..29479)
DNA (1263bp) protein (421aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=54 Tax=Staphylococcus epidermidis RepID=CLPX_STAEQ
ATP-dependent Clp protease ATP-binding subunit ClpX
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000255|HAMAP-Rule:MF_00175}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
Displaying items 1-30 of 65 in total

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