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L2_040_010G1_scaffold_104

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_010G1_scaffold_104_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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2..592
DNA (591bp) protein (197aa)
Penicillin-binding protein 2 n=1 Tax=Staphylococcus epidermidis NIHLM001 RepID=J0I9Q7_STAEP
pbp2; penicillin-binding protein 2
Penicillin-binding protein 2 {ECO:0000313|EMBL:AAW54396.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L2_040_010G1_scaffold_104_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(782..1114)
DNA (333bp) protein (111aa)
Uncharacterized protein n=50 Tax=Staphylococcus epidermidis RepID=Q5HP92_STAEQ
Hypothetical protein in cluster with penicillin-binding protein PBP1, Staphylococcal type
Uncharacterized protein {ECO:0000313|EMBL:EFE59718.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_040_010G1_scaffold_104_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(1119..1778)
DNA (660bp) protein (220aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Endonuclease III n=38 Tax=Staphylococcus epidermidis RepID=Q5HP91_STAEQ
endonuclease-like protein
L2_040_010G1_scaffold_104_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(1768..2454)
DNA (687bp) protein (229aa)
DNA replication protein DnaD, putative n=47 Tax=Staphylococcus epidermidis RepID=Q5HP90_STAEQ
Chromosome replication initiation protein dnaD
DnaD domain protein {ECO:0000313|EMBL:EFE59716.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_040_010G1_scaffold_104_5

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comp(2547..3839)
DNA (1293bp) protein (431aa)
Asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase n=48 Tax=Staphylococcus epidermidis RepID=SYN_STAEQ
Asparagine-tRNA ligase {ECO:0000313|EMBL:ETJ18652.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L2_040_010G1_scaffold_104_6
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(3960..6668)
DNA (2709bp) protein (903aa)
Probable ATP-dependent helicase DinG homolog; EC=3.6.4.12;; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Probable ATP-dependent helicase DinG homolog n=42 Tax=Staphylococcus epidermidis RepID=DING_STAEQ
DinG family ATP-dependent helicase YoaA
L2_040_010G1_scaffold_104_7
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(6693..7664)
DNA (972bp) protein (324aa)
biotin--[acetyl-CoA-carboxylase] ligase (EC:6.3.4.15)
BirA bifunctional protein n=42 Tax=Staphylococcus epidermidis RepID=Q5HP87_STAEQ
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_040_010G1_scaffold_104_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7651..8853)
DNA (1203bp) protein (401aa)
tRNA nucleotidyltransferase (EC:2.7.7.72)
CCA-adding enzyme {ECO:0000256|HAMAP-Rule:MF_01263}; EC=2.7.7.72 {ECO:0000256|HAMAP-Rule:MF_01263};; CCA tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01263}; tRNA CCA-pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01263}; tRNA adenylyl-/cytidylyl- transferase {ECO:0000256|HAMAP-Rule:MF_01263}; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01263}; tRNA-NT {ECO:0000256|HAMAP-Rule:MF_01263}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
CCA-adding enzyme n=47 Tax=Staphylococcus epidermidis RepID=CCA_STAEQ
L2_040_010G1_scaffold_104_9

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comp(8843..9985)
DNA (1143bp) protein (381aa)
Glycosyl transferase, group 1 family protein n=46 Tax=Staphylococcus epidermidis RepID=Q5HP85_STAEQ
glycosyl transferase, group 1 family protein
Glycosyltransferase, group 1 family protein {ECO:0000313|EMBL:ETJ18656.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L2_040_010G1_scaffold_104_10
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10007..10324)
DNA (318bp) protein (106aa)
Uncharacterized protein n=60 Tax=Staphylococcus epidermidis RepID=Q5HP84_STAEQ
MazG nucleotide pyrophosphohydrolase
MazG nucleotide pyrophosphohydrolase domain protein {ECO:0000313|EMBL:EFE59710.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_040_010G1_scaffold_104_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10505..11200)
DNA (696bp) protein (232aa)
Uncharacterized protein n=56 Tax=Staphylococcus epidermidis RepID=Q5HP83_STAEQ
probable metal-dependent peptidase
Uncharacterized protein {ECO:0000313|EMBL:AAW54414.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L2_040_010G1_scaffold_104_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11245..11838)
DNA (594bp) protein (198aa)
Uncharacterized protein n=44 Tax=Staphylococcus epidermidis RepID=Q5HP82_STAEQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFE59708.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_040_010G1_scaffold_104_13
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11850..12413)
DNA (564bp) protein (188aa)
UPF0302 protein SERP1032 n=46 Tax=Staphylococcus epidermidis RepID=Y1032_STAEQ
hypothetical protein
UPF0302 protein HMPREF0794_0528 {ECO:0000256|HAMAP-Rule:MF_00760}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_040_010G1_scaffold_104_14
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12427..13671)
DNA (1245bp) protein (415aa)
Uncharacterized protein n=43 Tax=Staphylococcus epidermidis RepID=Q5HP80_STAEQ
hypothetical protein
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EFE59706.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_040_010G1_scaffold_104_15
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13675..14976)
DNA (1302bp) protein (434aa)
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
3-phosphoshikimate 1-carboxyvinyltransferase n=23 Tax=Staphylococcus epidermidis RepID=AROA_STAEQ
L2_040_010G1_scaffold_104_16

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comp(14986..16050)
DNA (1065bp) protein (355aa)
aroB; 3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase n=44 Tax=Staphylococcus epidermidis RepID=AROB_STAEQ
3-dehydroquinate synthase {ECO:0000313|EMBL:ETJ18663.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L2_040_010G1_scaffold_104_17
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16078..17316)
DNA (1239bp) protein (413aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
aroC; chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=49 Tax=Staphylococcus epidermidis RepID=AROC_STAEQ
L2_040_010G1_scaffold_104_18
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(17725..18195)
DNA (471bp) protein (157aa)
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000256|HAMAP-Rule:MF_00451};; Nucleoside-2-P kinase {ECO:0000256|HAMAP-Rule:MF_00451}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Nucleoside diphosphate kinase n=3 Tax=Staphylococcus epidermidis RepID=D4FIM2_STAEP
ndk; nucleoside diphosphate kinase
L2_040_010G1_scaffold_104_19

Not on your lists

comp(18314..19273)
DNA (960bp) protein (320aa)
Heptaprenyl diphosphate synthase component II (EC:2.5.1.30)
Polyprenyl synthetase n=44 Tax=Staphylococcus epidermidis RepID=Q5HP75_STAEQ
Heptaprenyl diphosphate syntase component II {ECO:0000313|EMBL:ETJ18666.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L2_040_010G1_scaffold_104_20

Not on your lists

comp(19275..20000)
DNA (726bp) protein (242aa)
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC:2.1.1.-)
Demethylmenaquinone methyltransferase n=51 Tax=Staphylococcus epidermidis RepID=UBIE_STAEQ
Demethylmenaquinone methyltransferase {ECO:0000313|EMBL:ETJ18667.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L2_040_010G1_scaffold_104_21

Not on your lists

comp(19993..20571)
DNA (579bp) protein (193aa)
Uncharacterized protein n=47 Tax=Staphylococcus epidermidis RepID=Q5HP73_STAEQ
hypothetical protein, similar to component A of hexaprenyl diphosphate synthase
Uncharacterized protein {ECO:0000313|EMBL:ETJ18668.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L2_040_010G1_scaffold_104_22
Staphylococcus caprae, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21041..21313)
DNA (273bp) protein (91aa)
DNA-binding protein HU n=502 Tax=Staphylococcus RepID=DBH_STAAC
histone family protein DNA-binding protein HU
DNA-binding protein HU {ECO:0000313|EMBL:EES40119.1}; TaxID=525378 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus caprae M23864:W1.;"
L2_040_010G1_scaffold_104_23
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21484..22482)
DNA (999bp) protein (333aa)
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000255|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000255|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00394}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=46 Tax=Staphylococcus epidermidis RepID=GPDA_STAEQ
L2_040_010G1_scaffold_104_24
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(22503..23813)
DNA (1311bp) protein (437aa)
GTPase Der n=29 Tax=Staphylococcus epidermidis RepID=F3SYV5_STAEP
engA; ribosome-associated GTPase EngA
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
L2_040_010G1_scaffold_104_25
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(24029..25207)
DNA (1179bp) protein (393aa)
30S ribosomal protein S1 n=46 Tax=Staphylococcus epidermidis RepID=RS1_STAEQ
rpsA; 30S ribosomal protein S1
Putative ribosomal protein S1 {ECO:0000313|EMBL:EFE59695.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_040_010G1_scaffold_104_26
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25691..26338)
DNA (648bp) protein (216aa)
cmk; cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Cytidylate kinase n=8 Tax=Staphylococcus epidermidis RepID=F3SYV7_STAEP
L2_040_010G1_scaffold_104_27

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26417..27385
DNA (969bp) protein (323aa)
L-asparaginase (EC:3.5.1.1)
L-asparaginase n=42 Tax=Staphylococcus epidermidis RepID=Q5HP67_STAEQ
Putative asparaginase {ECO:0000313|EMBL:ETJ18673.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L2_040_010G1_scaffold_104_28
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(27597..28583)
DNA (987bp) protein (329aa)
Thioredoxin reductase (EC:1.8.1.9)
Pyridine nucleotide-disulfide oxidoreductase family protein n=72 Tax=Staphylococcus epidermidis RepID=Q5HP66_STAEQ
Thioredoxin reductase {ECO:0000313|EMBL:ESV19503.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
L2_040_010G1_scaffold_104_29
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(28716..30017)
DNA (1302bp) protein (434aa)
Elastin-binding protein EbpS n=7 Tax=Staphylococcus epidermidis RepID=H3VCF9_STAEP
Elastin-binding protein EbpS {ECO:0000313|EMBL:EFE59691.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Elastin binding protein EbpS
L2_040_010G1_scaffold_104_30

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comp(30138..31517)
DNA (1380bp) protein (460aa)
ATP-dependent DNA helicase, RecQ family n=1 Tax=Staphylococcus epidermidis NIH051475 RepID=J0TT79_STAEP
Probable ATP-dependent DNA helicase RecQ
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:ETJ18676.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Displaying items 1-30 of 36 in total

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