ggKbase home page

L2_040_071G1_scaffold_54

Search features with annotation key words

Displaying items 1-30 of 84 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_071G1_scaffold_54_1
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

797..2041
DNA (1245bp) protein (415aa)
S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}; EC=2.5.1.6 {ECO:0000256|RuleBase:RU000541};; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
metK; S-adenosylmethionine synthase MetK (EC:2.5.1.6)
S-adenosylmethionine synthase n=4 Tax=Clostridium butyricum RepID=M8JH07_CLOBU
L2_040_071G1_scaffold_54_2
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2305..4602
DNA (2298bp) protein (766aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
helicase, RecD/TraA family (EC:3.1.11.5)
Helicase, RecD/TraA family n=2 Tax=Clostridium butyricum RepID=M8JFP9_CLOBU
L2_040_071G1_scaffold_54_3
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4618..5634
DNA (1017bp) protein (339aa)
Uncharacterized protein n=4 Tax=Clostridium butyricum RepID=B1R2K7_CLOBU
ComF operon protein A, DNA transporter ATPase {ECO:0000313|EMBL:KJZ84454.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
superfamily II DNA/RNA helicase required for DNA uptake
L2_040_071G1_scaffold_54_4
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5607..6272
DNA (666bp) protein (222aa)
ComF family protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YUV2_CLOBU
Competence protein F, phosphoribosyltransferase domain protein YhgH {ECO:0000313|EMBL:KJZ84463.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
ComF protein
L2_040_071G1_scaffold_54_5
unknown

Not on your lists

6454..6555
DNA (102bp) protein (34aa)

This feature has no annotations

L2_040_071G1_scaffold_54_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6622..7155
DNA (534bp) protein (178aa)
Ribosomal subunit interface protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AEL5_CLOBU
Ribosomal subunit interface protein {ECO:0000313|EMBL:ENZ31199.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
ribosome-associated factor Y
L2_040_071G1_scaffold_54_7
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7501..10209
DNA (2709bp) protein (903aa)
Protein translocase subunit SecA n=2 Tax=Clostridium butyricum RepID=M8JH02_CLOBU
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
secA; preprotein translocase subunit SecA
L2_040_071G1_scaffold_54_8
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10523..11566
DNA (1044bp) protein (348aa)
Peptide chain release factor 2 n=2 Tax=Clostridium butyricum RepID=M8JFP5_CLOBU
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
prfB; peptide chain release factor 2
L2_040_071G1_scaffold_54_9
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11626..13008)
DNA (1383bp) protein (461aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YUF8_CLOBU
Aminopeptidase {ECO:0000313|EMBL:KJZ84410.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
aminopeptidase
L2_040_071G1_scaffold_54_10
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13208..13540)
DNA (333bp) protein (111aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=R0AEL1_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ96843.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
hypothetical protein
L2_040_071G1_scaffold_54_11
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13750..14445
DNA (696bp) protein (232aa)
Regulatory protein VanR n=2 Tax=Clostridium butyricum RepID=M8JHZ8_CLOBU
DNA-binding response regulator {ECO:0000313|EMBL:KJZ84455.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
gtcR; response regulator GtcR
L2_040_071G1_scaffold_54_12
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14435..15931
DNA (1497bp) protein (499aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AGG3_CLOBU
integral membrane sensor signal transduction histidine kinase
L2_040_071G1_scaffold_54_13
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16052..16957
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YUF3_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ31191.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
CAAX amino terminal protease family
L2_040_071G1_scaffold_54_14
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17152..19323
DNA (2172bp) protein (724aa)
Tex domain protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8KBF2_CLOBU
Transcription accessory protein (S1 RNA-binding domain) {ECO:0000313|EMBL:KJZ93981.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
Tex-like protein
L2_040_071G1_scaffold_54_15
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19411..20331
DNA (921bp) protein (307aa)
Exported membrane protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8J7K1_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ84447.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
DMT superfamily permease
L2_040_071G1_scaffold_54_16
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20780..21355
DNA (576bp) protein (192aa)
Riboflavin transporter n=4 Tax=Clostridium butyricum RepID=B1R163_CLOBU
Riboflavin transporter {ECO:0000256|PIRNR:PIRNR037778}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
riboflavin transporter
L2_040_071G1_scaffold_54_17
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21423..21866)
DNA (444bp) protein (148aa)
Ribosomal-protein-S18p-alanine acetyltransferase {ECO:0000313|EMBL:KJZ84413.1}; EC=2.3.1.- {ECO:0000313|EMBL:KJZ84413.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
rimI; putative ribosomal-protein-alanine acetyltransferase RimI (EC:2.3.1.128)
Ribosomal-protein-alanine acetyltransferase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JGG7_CLOBU
L2_040_071G1_scaffold_54_18
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21850..22584)
DNA (735bp) protein (245aa)
Glycoprotease family protein n=4 Tax=Clostridium butyricum RepID=B1R165_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ96840.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
yeaZ; tRNA threonylcarbamoyl adenosine modification protein YeaZ
L2_040_071G1_scaffold_54_19
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22581..23042)
DNA (462bp) protein (154aa)
Uncharacterized protein n=4 Tax=Clostridium butyricum RepID=B1R166_CLOBU
YjeE family ATPase {ECO:0000313|EMBL:ENZ31185.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
ydiB; UPF0079 ATP-binding protein YdiB
L2_040_071G1_scaffold_54_20
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23320..24288
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AEK1_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ96865.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
periplasmic solute binding protein
L2_040_071G1_scaffold_54_21
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24630..25547
DNA (918bp) protein (306aa)
Putative transcriptional regulator, AraC family n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JHY6_CLOBU
MSM (Multiple sugar metabolism) operon regulatory protein {ECO:0000313|EMBL:KJZ84436.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
AraC family transcriptional regulator
L2_040_071G1_scaffold_54_22
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25670..28060
DNA (2391bp) protein (797aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AGE2_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ31182.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
Alpha-glucosidase
L2_040_071G1_scaffold_54_23
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28197..28571
DNA (375bp) protein (125aa)
Putative endoribonuclease L-PSP n=3 Tax=Clostridium butyricum RepID=B1R170_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ96889.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
RutC family protein
L2_040_071G1_scaffold_54_24
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28679..29746)
DNA (1068bp) protein (356aa)
2-nitropropane dioxygenase, NPD n=2 Tax=Clostridium butyricum RepID=M8KBD8_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ31180.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
2-nitropropane dioxygenase, NPD
L2_040_071G1_scaffold_54_25
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30402..31382
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AEI6_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ84417.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
L2_040_071G1_scaffold_54_26
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31492..31674
DNA (183bp) protein (61aa)
Conserved domain protein n=4 Tax=Clostridium butyricum RepID=B1R176_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ94937.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
ssp; small, acid-soluble spore protein 1
L2_040_071G1_scaffold_54_27
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31795..32292)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AGD5_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ31177.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
PAP2 superfamily protein
L2_040_071G1_scaffold_54_28
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32518..34539
DNA (2022bp) protein (674aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YUC5_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ31176.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
L2_040_071G1_scaffold_54_29
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34606..35541
DNA (936bp) protein (312aa)
ABC transporter, substrate-binding protein n=4 Tax=Clostridium butyricum RepID=B1R179_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ96858.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
periplasmic solute binding protein
L2_040_071G1_scaffold_54_30
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35602..36585)
DNA (984bp) protein (328aa)
PAS domain S-box protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AEI0_CLOBU
PAS domain S-box protein {ECO:0000313|EMBL:ENZ31174.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
diguanylate cyclase/phosphodiesterase
Displaying items 1-30 of 84 in total

View Taxonomy