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L2_040_071G1_scaffold_505

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_071G1_scaffold_505_1
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..238
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=A8AJI0_CITK8
cspE; Cold shock protein
Cold shock protein {ECO:0000313|EMBL:ADA73023.1}; TaxID=591020 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri serotype X (strain 2002017).;"
L2_040_071G1_scaffold_505_2
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(291..674)
DNA (384bp) protein (128aa)
Putative fluoride ion transporter CrcB n=3 Tax=Citrobacter RepID=J0M2C4_9ENTR
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
camphor resistance protein CrcB
L2_040_071G1_scaffold_505_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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765..1553
DNA (789bp) protein (263aa)
Amidase n=1 Tax=Citrobacter sp. KTE30 RepID=R8UZR5_9ENTR
Carbon-nitrogen hydrolase family protein {ECO:0000313|EMBL:KEL80249.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
hydrolase
L2_040_071G1_scaffold_505_4
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1682..1885
DNA (204bp) protein (68aa)
Probable Sec-independent protein translocase protein TatE n=8 Tax=Citrobacter RepID=C1M8T3_9ENTR
Probable Sec-independent protein translocase protein TatE {ECO:0000256|HAMAP-Rule:MF_00903}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
tatE; preprotein translocase subunit SecE
L2_040_071G1_scaffold_505_5
Citrobacter youngae, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1984..2949)
DNA (966bp) protein (322aa)
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=500640 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter youngae ATCC 29220.;"
lipoyl synthase (EC:2.8.1.8)
Lipoyl synthase n=11 Tax=Citrobacter RepID=C1M8T4_9ENTR
L2_040_071G1_scaffold_505_6
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3156..3797)
DNA (642bp) protein (214aa)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
lipoate--protein ligase (EC:2.3.1.181)
Octanoyltransferase n=4 Tax=Citrobacter RepID=J1G676_9ENTR
L2_040_071G1_scaffold_505_7
Citrobacter youngae, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3911..4174)
DNA (264bp) protein (88aa)
UPF0250 protein CSAG_00426 n=12 Tax=Enterobacteriaceae RepID=C1M8T6_9ENTR
hypothetical protein
UPF0250 protein CIT292_08193 {ECO:0000256|HAMAP-Rule:MF_00659}; TaxID=500640 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter youngae ATCC 29220.;"
L2_040_071G1_scaffold_505_8
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4281..5492)
DNA (1212bp) protein (404aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
D-alanyl-D-alanine carboxypeptidase dacA n=10 Tax=Citrobacter RepID=C1M8T7_9ENTR
D-alanyl-D-alanine carboxypeptidase dacA {ECO:0000313|EMBL:KDF21024.1}; TaxID=1439318 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii MGH 56.;"
L2_040_071G1_scaffold_505_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5635..6744)
DNA (1110bp) protein (370aa)
Rare lipoprotein A n=2 Tax=Citrobacter RepID=R1HNM3_CITFR
Rare lipoprotein A {ECO:0000313|EMBL:CDL38029.1}; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
lipoprotein
L2_040_071G1_scaffold_505_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6755..7867)
DNA (1113bp) protein (371aa)
Rod shape-determining protein rodA n=9 Tax=Enterobacteriaceae RepID=C1M8T9_9ENTR
Rod shape-determining protein RodA {ECO:0000313|EMBL:KEL80241.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
cell wall shape-determining protein
L2_040_071G1_scaffold_505_11
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7870..9771)
DNA (1902bp) protein (634aa)
Penicillin-binding protein 2 n=2 Tax=Citrobacter RepID=C1M8U0_9ENTR
Penicillin-binding protein 2 {ECO:0000313|EMBL:ETX65159.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
penicillin-binding protein 2
L2_040_071G1_scaffold_505_12
Citrobacter sp. KTE151, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9802..10269)
DNA (468bp) protein (156aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1169322 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. KTE151.;"
Ribosomal RNA large subunit methyltransferase H n=16 Tax=Enterobacteriaceae RepID=RLMH_CITK8
rRNA large subunit methyltransferase
L2_040_071G1_scaffold_505_13
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10273..10590)
DNA (318bp) protein (106aa)
Ribosomal silencing factor RsfS n=12 Tax=Enterobacteriaceae RepID=C1M8U2_9ENTR
ribosome-associated protein
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
L2_040_071G1_scaffold_505_14
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10845..11456)
DNA (612bp) protein (204aa)
Alpha-ribazole phosphatase n=1 Tax=Citrobacter sp. KTE30 RepID=R8V3C5_9ENTR
Alpha-ribazole phosphatase {ECO:0000313|EMBL:KJC10778.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
alpha-ribazole phosphatase
L2_040_071G1_scaffold_505_15
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11553..12647
DNA (1095bp) protein (365aa)
Threonine-phosphate decarboxylase {ECO:0000313|EMBL:KJC08425.1}; EC=4.1.1.81 {ECO:0000313|EMBL:KJC08425.1};; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
threonine-phosphate decarboxylase (EC:4.1.1.81)
Threonine-phosphate decarboxylase n=1 Tax=Citrobacter freundii GTC 09629 RepID=R1FR89_CITFR
L2_040_071G1_scaffold_505_16
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12622..13272)
DNA (651bp) protein (217aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
Probable nicotinate-nucleotide adenylyltransferase n=4 Tax=Citrobacter RepID=J1G687_9ENTR
nicotinate-nucleotide adenylyltransferase
L2_040_071G1_scaffold_505_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13265..14296)
DNA (1032bp) protein (344aa)
DNA polymerase III, delta subunit {ECO:0000313|EMBL:KEL80234.1}; EC=2.7.7.7 {ECO:0000313|EMBL:KEL80234.1};; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
DNA polymerase III subunit delta n=5 Tax=Citrobacter RepID=J0M2E0_9ENTR
holA; DNA polymerase III subunit delta
L2_040_071G1_scaffold_505_18
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14296..14895)
DNA (600bp) protein (200aa)
LPS-assembly lipoprotein RplB n=3 Tax=Citrobacter RepID=J1G6F8_9ENTR
LPS-assembly lipoprotein LptE {ECO:0000256|HAMAP-Rule:MF_01186, ECO:0000256|SAAS:SAAS00074334}; Flags: Precursor;; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
LPS biosynthesis protein
L2_040_071G1_scaffold_505_19
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14910..17408)
DNA (2499bp) protein (833aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
Leucine--tRNA ligase n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3CTC8_CITFR
leuS; leucyl-tRNA synthetase
Displaying 19 items

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