ggKbase home page

L2_040_089G1_scaffold_469

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_089G1_scaffold_469_1
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19..852)
DNA (834bp) protein (278aa)
Prephenate dehydrogenase n=4 Tax=Clostridium butyricum RepID=B1QZ33_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ86079.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
prephenate dehydrogenase
L2_040_089G1_scaffold_469_2
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(934..1947)
DNA (1014bp) protein (338aa)
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta {ECO:0000313|EMBL:KJZ86069.1}; EC=2.5.1.54 {ECO:0000313|EMBL:KJZ86069.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
Phospho-2-dehydro-3-deoxyheptonate aldolase n=3 Tax=Clostridium butyricum RepID=B1QZ32_CLOBU
3-deoxy-7-phosphoheptulonate synthase
L2_040_089G1_scaffold_469_3
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2137..2901)
DNA (765bp) protein (255aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00214, ECO:0000256|SAAS:SAAS00219718}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00214, ECO:0000256|SAAS:SAAS00219718};; Type I DHQase {ECO:0000256|HAMAP-Rule:MF_00214}; Type I dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
aroD; 3-dehydroquinate dehydratase AroD (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AU24_CLOBU
L2_040_089G1_scaffold_469_4
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3022..4041)
DNA (1020bp) protein (340aa)
DctP family TRAP transporter solute receptor n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z6P5_CLOBU
DctP family TRAP transporter solute receptor {ECO:0000313|EMBL:ENZ35546.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
tripartite ATP-independent periplasmic transporter solute receptor, DctP family
L2_040_089G1_scaffold_469_5
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4052..5347)
DNA (1296bp) protein (432aa)
Trap dicarboxylate transporter, dctm subunit n=3 Tax=Clostridium butyricum RepID=C4ILX6_CLOBU
TRAP-type C4-dicarboxylate transport system, large permease component {ECO:0000313|EMBL:KJZ86057.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
TRAP transporter, DctM subunit
L2_040_089G1_scaffold_469_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5352..5831)
DNA (480bp) protein (160aa)
C4-dicarboxylate transport system n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K8Q0_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ35544.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
TRAP-type C4-dicarboxylate transport system, small permease component
L2_040_089G1_scaffold_469_7
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6036..6908)
DNA (873bp) protein (291aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
Shikimate dehydrogenase n=4 Tax=Clostridium butyricum RepID=B1QZ28_CLOBU
hypothetical protein
L2_040_089G1_scaffold_469_8
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7104..8312)
DNA (1209bp) protein (403aa)
Inner membrane transport protein YdiN n=2 Tax=Clostridium butyricum RepID=M8JD01_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ86037.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
inner membrane transport protein YdiN
L2_040_089G1_scaffold_469_9
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8614..9648
DNA (1035bp) protein (345aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=N9Z6N9_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ86001.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
putative transcription regulator, AraC family
L2_040_089G1_scaffold_469_10
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9751..11754)
DNA (2004bp) protein (668aa)
NADH oxidase (EC:1.-.-.-)
NADH oxidase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JM58_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ88128.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
L2_040_089G1_scaffold_469_11
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12005..13009
DNA (1005bp) protein (335aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=R0AS06_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ86002.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
yybE1; HTH-type transcriptional regulator YybE
L2_040_089G1_scaffold_469_12
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13033..13548)
DNA (516bp) protein (172aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
aroK; shikimate kinase AroK (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8KGW5_CLOBU
L2_040_089G1_scaffold_469_13
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13625..14437)
DNA (813bp) protein (271aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
aroE1; shikimate dehydrogenase AroE (EC:1.1.1.25)
Shikimate dehydrogenase n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AU10_CLOBU
L2_040_089G1_scaffold_469_14
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14515..15669)
DNA (1155bp) protein (385aa)
pheA: P-protein (EC:5.4.99.5 4.2.1.51)
Chorismate mutase n=2 Tax=Clostridium butyricum RepID=M8JNE4_CLOBU
Chorismate mutase {ECO:0000313|EMBL:ENZ35536.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
L2_040_089G1_scaffold_469_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15703..16743)
DNA (1041bp) protein (347aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
aroC; chorismate synthase AroC (EC:4.2.3.5)
Chorismate synthase n=2 Tax=Clostridium butyricum RepID=M8JM52_CLOBU
L2_040_089G1_scaffold_469_16
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16721..17944)
DNA (1224bp) protein (408aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase AroA (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase n=2 Tax=Clostridium butyricum RepID=M8K8P1_CLOBU
L2_040_089G1_scaffold_469_17
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17959..19011)
DNA (1053bp) protein (351aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
3-dehydroquinate synthase n=4 Tax=Clostridium butyricum RepID=B1QZ18_CLOBU
aroB; 3-dehydroquinate synthase
L2_040_089G1_scaffold_469_18
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19052..20065)
DNA (1014bp) protein (338aa)
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta {ECO:0000313|EMBL:KJZ88148.1}; EC=2.5.1.54 {ECO:0000313|EMBL:KJZ88148.1};; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
aroF1; phospho-2-dehydro-3-deoxyheptonate aldolase AroF (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=4 Tax=Clostridium butyricum RepID=B1QZ17_CLOBU
L2_040_089G1_scaffold_469_19
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20598..20900)
DNA (303bp) protein (101aa)
Nucleotidyltransferase {ECO:0000313|EMBL:KJZ86143.1}; EC=2.7.7.- {ECO:0000313|EMBL:KJZ86143.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
Uncharacterized protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JND9_CLOBU
DNA polymerase subunit beta
L2_040_089G1_scaffold_469_20
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20903..21304)
DNA (402bp) protein (134aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=M8JM47_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ89946.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
nucleotidyltransferase substrate binding protein
L2_040_089G1_scaffold_469_21
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21452..22882)
DNA (1431bp) protein (477aa)
Cardiolipin synthase {ECO:0000256|HAMAP-Rule:MF_01916}; Short=CL synthase {ECO:0000256|HAMAP-Rule:MF_01916};; EC=2.7.8.- {ECO:0000256|HAMAP-Rule:MF_01916};; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
Cardiolipin synthase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K8N6_CLOBU
phospholipase D/transphosphatidylase
Displaying 21 items

View Taxonomy