ggKbase home page

L2_040_089G1_scaffold_545

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_089G1_scaffold_545_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1..213
DNA (213bp) protein (71aa)
50S ribosomal protein L27 n=1 Tax=Escherichia coli cloneA_i1 RepID=G5KT13_ECOLX
rpmA; 50S ribosomal protein L27
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=1182682 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE75.;"
L2_040_089G1_scaffold_545_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

340..1305
DNA (966bp) protein (322aa)
Uncharacterized inner membrane transporter YhbE n=778 Tax=Enterobacteriaceae RepID=YHBE_ECO57
hypothetical protein
Integral membrane protein {ECO:0000313|EMBL:EGB65524.1}; TaxID=656429 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli TA007.;"
L2_040_089G1_scaffold_545_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1321..2493
DNA (1173bp) protein (391aa)
GTPase Obg n=573 Tax=Escherichia RepID=OBG_ECO45
obgE; GTPase ObgE
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=1182702 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE103.;"
L2_040_089G1_scaffold_545_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2679..4112)
DNA (1434bp) protein (478aa)
dacB; D-alanyl-D-alanine carboxypeptidase/endopeptidase (EC:3.4.16.4)
D-alanyl-D-alanine carboxypeptidase DacB n=188 Tax=Enterobacteriaceae RepID=DACB_ECOLI
D-alanyl-D-alanine carboxypeptidase dacB {ECO:0000313|EMBL:EQQ02138.1}; TaxID=1281024 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 87 (4-5977630).;"
L2_040_089G1_scaffold_545_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4360..4836
DNA (477bp) protein (159aa)
Transcription elongation factor GreA n=1374 Tax=Enterobacteriaceae RepID=GREA_ECO57
greA; transcription elongation factor
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
L2_040_089G1_scaffold_545_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4992..5285)
DNA (294bp) protein (98aa)
RNA-binding protein YhbY n=1405 Tax=Enterobacteriaceae RepID=YHBY_ECO57
hypothetical protein
RNA-binding protein YhbY {ECO:0000313|EMBL:EMV54269.1}; TaxID=1116032 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2871950.;"
L2_040_089G1_scaffold_545_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5511..5948
DNA (438bp) protein (146aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547, ECO:0000256|SAAS:SAAS00042948}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547, ECO:0000256|SAAS:SAAS00042802};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; rRNA (uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; TaxID=1268978 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 113303.;"
Ribosomal RNA large subunit methyltransferase E n=1 Tax=Escherichia coli p0305293.11 RepID=N4INQ0_ECOLX
rlmE; 23S rRNA methyltransferase J
L2_040_089G1_scaffold_545_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6143..7156
DNA (1014bp) protein (338aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=868192 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC12B.;"
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Escherichia coli 2866550 RepID=M8TSJ5_ECOLX
ftsH; ATP-dependent metalloprotease
L2_040_089G1_scaffold_545_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7137..7739
DNA (603bp) protein (201aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1182698 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE98.;"
ATP-dependent zinc metalloprotease FtsH n=2 Tax=Escherichia coli RepID=M9AGZ8_ECOLX
hflB; ATP-dependent metalloprotease
L2_040_089G1_scaffold_545_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7829..8677
DNA (849bp) protein (283aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=868172 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC8C.;"
Dihydropteroate synthase (Fragment) n=1 Tax=Escherichia coli MS 185-1 RepID=D8CCI0_ECOLX
folP; 7,8-dihydropteroate synthase
L2_040_089G1_scaffold_545_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8670..10007
DNA (1338bp) protein (446aa)
glmM; phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=1280961 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 6 (3-8296502).;"
Phosphoglucosamine mutase n=521 Tax=Enterobacteriaceae RepID=GLMM_ECO24
L2_040_089G1_scaffold_545_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10235..10567
DNA (333bp) protein (111aa)
Protein export-membrane protein n=340 Tax=Enterobacteriaceae RepID=J7R9F2_ECOLX
secG; preprotein translocase subunit SecG
Preprotein translocase, SecG subunit {ECO:0000313|EMBL:EFK44699.1}; TaxID=679206 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 119-7.;"
L2_040_089G1_scaffold_545_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11127..12752
DNA (1626bp) protein (542aa)
Arylsulfatase {ECO:0000313|EMBL:EGB87521.1}; EC=3.1.6.- {ECO:0000313|EMBL:EGB87521.1};; TaxID=749539 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 117-3.;"
Putative alkaline phosphatase I n=1 Tax=Escherichia coli (strain SE11) RepID=B6I1P7_ECOSE
sulfatase
L2_040_089G1_scaffold_545_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12760..14103)
DNA (1344bp) protein (448aa)
argG; argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00581, ECO:0000256|SAAS:SAAS00009500}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00581, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00581}; TaxID=1280998 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 50 (4-2593475).;"
Argininosuccinate synthase n=25 Tax=Escherichia coli RepID=ASSY_ECOHS
L2_040_089G1_scaffold_545_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14734..15186
DNA (453bp) protein (151aa)
Ribosome maturation factor RimP n=796 Tax=Enterobacteriaceae RepID=RIMP_ECO24
ribosome maturation protein RimP
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1169353 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE36.;"
L2_040_089G1_scaffold_545_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15214..16701
DNA (1488bp) protein (496aa)
Transcription termination/antitermination protein NusA n=1036 Tax=Enterobacteriaceae RepID=NUSA_ECO57
nusA; Transcription elongation factor
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1169376 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE112.;"
L2_040_089G1_scaffold_545_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16726..19398
DNA (2673bp) protein (891aa)
Translation initiation factor IF-2 n=879 Tax=Enterobacteriaceae RepID=IF2_ECO24
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=868172 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC8C.;"
infB; translation initiation factor IF-2
L2_040_089G1_scaffold_545_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19562..19963
DNA (402bp) protein (134aa)
Ribosome-binding factor A n=4 Tax=Enterobacteriaceae RepID=C1HIH1_9ESCH
rbfA; ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=701177 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O55:H7 (strain CB9615 / EPEC).;"
L2_040_089G1_scaffold_545_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19963..20907
DNA (945bp) protein (315aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043720};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1182676 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE69.;"
tRNA pseudouridine synthase B n=1113 Tax=Enterobacteriaceae RepID=TRUB_ECO57
truB; tRNA pseudouridine synthase B
L2_040_089G1_scaffold_545_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


21056..21277
DNA (222bp) protein (74aa)
30S ribosomal protein S15 n=1191 Tax=Enterobacteriaceae RepID=RS15_ECO24
rpsO; 30S ribosomal protein S15
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=868192 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC12B.;"
L2_040_089G1_scaffold_545_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21448..23583
DNA (2136bp) protein (712aa)
pnp; polynucleotide phosphorylase/polyadenylase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1444091 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 6-537-08_S1_C2.;"
Polyribonucleotide nucleotidyltransferase n=149 Tax=Escherichia RepID=PNP_ECOBW
L2_040_089G1_scaffold_545_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23692..24000
DNA (309bp) protein (103aa)
Lipoprotein NlpI n=1 Tax=Escherichia coli P0304816.2 RepID=N4BGN9_ECOLX
nlpI; hypothetical protein
Lipoprotein NlpI {ECO:0000256|PIRNR:PIRNR004654}; TaxID=1116119 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2719100.;"
Displaying 22 items

View Taxonomy