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L2_040_124G1_scaffold_1

Search features with annotation key words

Displaying items 1-30 of 343 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_124G1_scaffold_1_1
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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1..492
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GF61_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB23005.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_040_124G1_scaffold_1_2
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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777..1310
DNA (534bp) protein (178aa)
Transcriptional regulator, MarR family n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2C0F4_BIFBI
Transcriptional regulator {ECO:0000313|EMBL:CDB23004.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
slyA; transcriptional regulator
L2_040_124G1_scaffold_1_3
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1307..3190
DNA (1884bp) protein (628aa)
ABC transporter ATP-binding protein (EC:3.6.3.44)
ATP-binding protein of ABC transporter system n=2 Tax=Bifidobacterium RepID=E4P075_BIFBP
ATP-binding protein of ABC transporter system {ECO:0000313|EMBL:CDB23003.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_040_124G1_scaffold_1_4
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3187..5202
DNA (2016bp) protein (672aa)
ABC transporter ATP-binding protein (EC:3.6.3.42)
ATP-binding protein of ABC transporter system n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P076_BIFBP
ATP-binding protein of ABC transporter system {ECO:0000313|EMBL:CDB23002.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_040_124G1_scaffold_1_5
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5439..6425)
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GP48_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB23001.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
patatin-like phospholipase domain
L2_040_124G1_scaffold_1_6
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6504..7313)
DNA (810bp) protein (270aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
murI; glutamate racemase MurI (EC:5.1.1.3)
Glutamate racemase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GF52_9BIFI
L2_040_124G1_scaffold_1_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7560..8459
DNA (900bp) protein (300aa)
Diaminopimelate epimerase {ECO:0000256|SAAS:SAAS00028055}; EC=5.1.1.7 {ECO:0000256|SAAS:SAAS00028063};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Diaminopimelate epimerase n=2 Tax=Bifidobacterium bifidum RepID=E3EM00_BIFBS
dapF; diaminopimelate epimerase
L2_040_124G1_scaffold_1_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8560..9219)
DNA (660bp) protein (220aa)
Vitamin K epoxide reductase family n=2 Tax=Bifidobacterium bifidum RepID=E4V890_BIFBI
vitamin K epoxide reductase
Vitamin K epoxide reductase family {ECO:0000313|EMBL:EFR49832.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_040_124G1_scaffold_1_9
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9355..10236
DNA (882bp) protein (294aa)
PHP C-terminal domain protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6H9X6_9BIFI
PHP C-terminal domain protein {ECO:0000313|EMBL:CDB22997.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
PHP C-terminal domain-containing protein
L2_040_124G1_scaffold_1_10
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10395..10619)
DNA (225bp) protein (75aa)
Uncharacterized protein n=4 Tax=Bifidobacterium RepID=K2M115_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB22996.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_040_124G1_scaffold_1_11
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10776..12242)
DNA (1467bp) protein (489aa)
Putative aminoglycoside phosphotransferase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GF26_9BIFI
Putative aminoglycoside phosphotransferase {ECO:0000313|EMBL:CDB22995.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
aminoglycoside phosphotransferase
L2_040_124G1_scaffold_1_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12281..13885
DNA (1605bp) protein (535aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
UvrD/REP helicase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DVX0_BIFBI
uvrD; putative DNA helicase II-like protein
L2_040_124G1_scaffold_1_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13943..15487)
DNA (1545bp) protein (515aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WGN1_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04044.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_040_124G1_scaffold_1_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15549..16397
DNA (849bp) protein (283aa)
peptidase S16, lon domain-containing protein (EC:3.4.21.53)
Peptidase S16, lon domain protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P086_BIFBP
Lon protease (S16) C-terminal proteolytic domain {ECO:0000313|EMBL:EKF16488.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_040_124G1_scaffold_1_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16593..17018
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2C0H1_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83964.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L2_040_124G1_scaffold_1_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17202..18245)
DNA (1044bp) protein (348aa)
Glucose-resistance amylase regulator n=2 Tax=Bifidobacterium bifidum RepID=K2H8Q2_BIFBI
Glucose-resistance amylase regulator {ECO:0000313|EMBL:EKE50376.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
ccpA; glucose-resistance amylase regulator
L2_040_124G1_scaffold_1_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18390..18764)
DNA (375bp) protein (125aa)
Uncharacterized protein n=5 Tax=Bifidobacterium bifidum RepID=E4V8A0_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE50377.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_040_124G1_scaffold_1_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18868..19764)
DNA (897bp) protein (299aa)
Phosphomethylpyrimidine kinase n=2 Tax=Bifidobacterium bifidum RepID=E3EM11_BIFBS
thiD; phosphomethylpyrimidine kinase
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:ADO52707.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_124G1_scaffold_1_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19872..21080
DNA (1209bp) protein (403aa)
ATPase family associated with various cellular activities (AAA) n=6 Tax=Bifidobacterium RepID=E3EM12_BIFBS
ATPase family associated with various cellular activities (AAA)
ATPase family associated with various cellular activities (AAA) {ECO:0000313|EMBL:EKF16483.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_040_124G1_scaffold_1_20
unknown

Not on your lists

21193..21729
DNA (537bp) protein (179aa)

This feature has no annotations

L2_040_124G1_scaffold_1_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21670..22143)
DNA (474bp) protein (158aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=I3WGN8_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI42556.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_040_124G1_scaffold_1_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22266..25022)
DNA (2757bp) protein (919aa)
Phosphomethylpyrimidine synthase {ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|SAAS:SAAS00007809};; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
thiC; thiamine biosynthesis protein (EC:2.5.1.3)
Thiamine biosynthesis protein n=4 Tax=Bifidobacterium bifidum RepID=I3WGN9_BIFBI
L2_040_124G1_scaffold_1_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25117..26010)
DNA (894bp) protein (298aa)
Hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030}; EC=2.7.1.50 {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030};; 4-methyl-5-beta-hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Hydroxyethylthiazole kinase n=7 Tax=Bifidobacterium RepID=E3EMP4_BIFBS
thiM; Hydroxyethylthiazole kinase
L2_040_124G1_scaffold_1_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26404..32211
DNA (5808bp) protein (1936aa)
Beta-galactosidase BbgIII {ECO:0000313|EMBL:ABE27152.1}; EC=3.2.1.23 {ECO:0000313|EMBL:ABE27152.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Beta-galactosidase BbgIII n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=A4K5H9_BIFBI
beta-galactosidase BbgIII
L2_040_124G1_scaffold_1_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


32387..33907
DNA (1521bp) protein (507aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
glyS; blycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase n=3 Tax=Bifidobacterium bifidum RepID=E3EMP6_BIFBS
L2_040_124G1_scaffold_1_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33998..35278
DNA (1281bp) protein (427aa)
tRNA-dihydrouridine synthase {ECO:0000313|EMBL:KFI42561.1}; EC=1.3.1.89 {ECO:0000313|EMBL:KFI42561.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
TIM-barrel protein, nifR3 family n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DVY4_BIFBI
hypothetical protein
L2_040_124G1_scaffold_1_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35427..36707
DNA (1281bp) protein (427aa)
Cell division protein FtsZ n=8 Tax=Bifidobacterium bifidum RepID=E3EMP8_BIFBS
ftsZ; cell division protein
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_040_124G1_scaffold_1_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36729..37199
DNA (471bp) protein (157aa)
Cell division protein SepF n=8 Tax=Bifidobacterium RepID=E3EMP9_BIFBS
hypothetical protein
Cell division protein SepF {ECO:0000256|HAMAP-Rule:MF_01197}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_040_124G1_scaffold_1_29
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37327..37608
DNA (282bp) protein (94aa)
Uncharacterized protein n=8 Tax=Bifidobacterium RepID=E4V8B3_BIFBI
tlyC; putative hemolysin
Conserved hypothetical membrane spanning protein with YGGT family {ECO:0000313|EMBL:CDB22978.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_040_124G1_scaffold_1_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37718..39019
DNA (1302bp) protein (434aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=I3WGP7_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04060.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Displaying items 1-30 of 343 in total

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