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L2_040_124G1_scaffold_16

Search features with annotation key words

Displaying items 1-30 of 181 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_124G1_scaffold_16_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..379)
DNA (378bp) protein (126aa)
Diaminopropionate ammonia-lyase family protein n=7 Tax=Clostridium difficile RepID=T2WBS6_CLODI
Pyridoxal-phosphate dependent enzyme family protein {ECO:0000313|EMBL:EQE59601.1}; Flags: Fragment;; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
dpaL2; diaminopropionate ammonia-lyase
L2_040_124G1_scaffold_16_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1002..1541)
DNA (540bp) protein (180aa)
Uncharacterized protein n=94 Tax=Clostridium difficile RepID=C9XRA5_CLODC
hypothetical protein
2'-5' RNA ligase superfamily protein {ECO:0000313|EMBL:EQG73743.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_040_124G1_scaffold_16_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1618..3435)
DNA (1818bp) protein (606aa)
Sigma-54 interaction domain protein n=150 Tax=Clostridium difficile RepID=G6BQL6_CLODI
Sigma-54 interaction domain protein {ECO:0000313|EMBL:EHJ33818.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
sigma-54-dependent transcriptional regulator
L2_040_124G1_scaffold_16_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3819..4196)
DNA (378bp) protein (126aa)
Translation initiation inhibitor n=208 Tax=Clostridium difficile RepID=T2T987_CLODI
tdcF; regulatory endoribonuclease
Putative regulatory endoribonuclease {ECO:0000313|EMBL:CCK95694.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
L2_040_124G1_scaffold_16_5
unknown

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4567..4776
DNA (210bp) protein (70aa)

This feature has no annotations

L2_040_124G1_scaffold_16_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5101..5586
DNA (486bp) protein (162aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T2XPU2_CLODI
uncharacterised protein
Uncharacterized protein {ECO:0000313|EMBL:EQG73800.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_040_124G1_scaffold_16_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5786..6325)
DNA (540bp) protein (180aa)
Flavin reductase {ECO:0000313|EMBL:CDS85523.1}; Iron-sulfur flavoprotein {ECO:0000313|EMBL:CKG80988.1}; EC=1.-.-.- {ECO:0000313|EMBL:CKG80988.1};; Putative NADPH-dependent FMN reductase {ECO:0000313|EMBL:CDT55422.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
NADPH-dependent FMN reductase family protein n=121 Tax=Clostridium difficile RepID=T3G2D4_CLODC
putative NADPH-dependent FMN reductase
L2_040_124G1_scaffold_16_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6318..6731)
DNA (414bp) protein (138aa)
HTH-type transcriptional regulator AdhR n=187 Tax=Clostridium difficile RepID=C9XRB0_CLODC
MerR family transcriptional regulator
MerR-family transcriptional regulator {ECO:0000313|EMBL:CBE06820.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L2_040_124G1_scaffold_16_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6767..7888)
DNA (1122bp) protein (374aa)
Aldo/keto reductase family protein n=132 Tax=Clostridium difficile RepID=C9XRD6_CLODC
oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:CBE06822.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L2_040_124G1_scaffold_16_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8487..10139
DNA (1653bp) protein (551aa)
Peptidase propeptide and YPEB domain protein n=9 Tax=Clostridium difficile RepID=T2XPU7_CLODI
cwp21; putative cell surface peptidase, M4family-cwp20
Peptidase propeptide and YPEB domain protein {ECO:0000313|EMBL:EQE59583.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_040_124G1_scaffold_16_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10438..11187
DNA (750bp) protein (250aa)
ABC transporter family protein n=64 Tax=Clostridium difficile RepID=T2T940_CLODI
Bacitracin ABC efflux transporter (ATP-binding protein) {ECO:0000313|EMBL:CCL23597.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
ABC transporter ATP-binding protein
L2_040_124G1_scaffold_16_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11200..13227
DNA (2028bp) protein (676aa)
FtsX-like permease family protein n=2 Tax=Clostridium difficile RepID=T4PEM5_CLODI
salivaricin lantibiotic ABC transporter permease
Abc transporter, permease associated with salivaricin lantibiotic {ECO:0000313|EMBL:CBE06827.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L2_040_124G1_scaffold_16_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13431..14954
DNA (1524bp) protein (508aa)
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein n=5 Tax=Clostridium difficile RepID=T2XPD4_CLODI
Putative sensor histidine kinase {ECO:0000313|EMBL:CDT55566.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
sensor histidine kinase
L2_040_124G1_scaffold_16_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14926..15546
DNA (621bp) protein (207aa)
Bacterial regulatory s, luxR family protein n=2 Tax=Clostridium difficile RepID=T2XMY4_CLODI
Salavaricin two-component response regulator {ECO:0000313|EMBL:CDS85504.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
salavaricin two-component response regulator
L2_040_124G1_scaffold_16_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15561..15671)
DNA (111bp) protein (37aa)
Uncharacterized protein n=4 Tax=Clostridium difficile RepID=U3UGN3_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCK88563.1}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
L2_040_124G1_scaffold_16_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15735..16661)
DNA (927bp) protein (309aa)
Conserved phage family protein n=5 Tax=Clostridium difficile RepID=T2XPV3_CLODI
Putative phage-related protein {ECO:0000313|EMBL:CCL23603.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
putative phage-related protein
L2_040_124G1_scaffold_16_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17271..18191
DNA (921bp) protein (307aa)
Bacterial regulatory helix-turn-helix s, AraC family protein n=182 Tax=Clostridium difficile RepID=T3G2A8_CLODC
Transcriptional regulator, AraC family
Transcriptional regulator, AraC family {ECO:0000313|EMBL:CCL23604.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_040_124G1_scaffold_16_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18277..20697
DNA (2421bp) protein (807aa)
Excinuclease ABC subunit A n=2 Tax=Clostridium difficile RepID=T2XP53_CLODI
Putative UvrABC system protein A 2 (UvrA protein 2) (Excinuclease ABC subunit A 2) {ECO:0000313|EMBL:CDS89268.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative UvrABC system protein A 2 (UvrA protein2) (Excinuclease ABC subunit A 2)
L2_040_124G1_scaffold_16_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20697..21719
DNA (1023bp) protein (341aa)
Beta-lactamase family protein n=5 Tax=Clostridium difficile RepID=T4KBI0_CLODI
penicillin-binding protein
Putative penicillin-binding protein {ECO:0000313|EMBL:CCL23606.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_040_124G1_scaffold_16_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21853..22599
DNA (747bp) protein (249aa)
MerR regulatory family protein n=136 Tax=Clostridium difficile RepID=C9XRE6_CLODC
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:CCL23607.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_040_124G1_scaffold_16_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22685..23935
DNA (1251bp) protein (417aa)
Major Facilitator Superfamily protein n=189 Tax=Clostridium difficile RepID=T3G428_CLODC
cme; Multidrug resistance protein Cme;Transporter,Major Facilitator Superfamily (MFS)
Multidrug resistance protein Cme Transporter,Major Facilitator Superfamily (MFS) {ECO:0000313|EMBL:CAJ70095.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_040_124G1_scaffold_16_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24452..25465)
DNA (1014bp) protein (338aa)
ABC-2 transporter family protein n=5 Tax=Clostridium difficile RepID=T2V958_CLODI
ABC-type transport system, multidrug-family permease {ECO:0000313|EMBL:CCL23612.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
ABC-type transport system, multidrug-familypermease
L2_040_124G1_scaffold_16_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25468..26496)
DNA (1029bp) protein (343aa)
ABC-type transport system, multidrug-family permease n=118 Tax=Clostridium difficile RepID=Q17ZU5_CLOD6
ABC-type transport system, multidrug-familypermease
ABC transporter permease {ECO:0000313|EMBL:CKG80662.1}; ABC-type transport system, multidrug-family permease {ECO:0000313|EMBL:CDT55729.1}; ABC-type transport system, multidrug-familypermease {ECO:0000313|EMBL:CEJ99851.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_040_124G1_scaffold_16_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26496..27341)
DNA (846bp) protein (282aa)
ABC transporter, ATP-binding protein n=61 Tax=Clostridium difficile RepID=C9XRF0_CLODC
ABC transporter ATP-binding protein
ABC transporter family protein {ECO:0000313|EMBL:EQE59603.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_040_124G1_scaffold_16_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27338..27460)
DNA (123bp) protein (41aa)
Uncharacterized protein n=73 Tax=Clostridium difficile RepID=G6BQN2_CLODI
Putative membrane protein {ECO:0000313|EMBL:EQG73795.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_040_124G1_scaffold_16_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27785..28915)
DNA (1131bp) protein (377aa)
Two-component sensor histidine kinase {ECO:0000313|EMBL:CDS85483.1}; EC=2.7.13.3 {ECO:0000313|EMBL:CKG80579.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
HAMP domain protein n=50 Tax=Clostridium difficile RepID=T3G432_CLODC
Two-component sensor histidine kinase
L2_040_124G1_scaffold_16_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28912..29583)
DNA (672bp) protein (224aa)
Response regulator n=112 Tax=Clostridium difficile RepID=T2T924_CLODI
Response regulator {ECO:0000313|EMBL:EQG73850.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Two-component response regulator
L2_040_124G1_scaffold_16_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29797..30447)
DNA (651bp) protein (217aa)
Membrane protein insertase, YidC/Oxa1 family n=74 Tax=Clostridium difficile RepID=G6B6J4_CLODI
Membrane protein insertase, YidC/Oxa1 family {ECO:0000313|EMBL:EHJ33792.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
hypothetical protein
L2_040_124G1_scaffold_16_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30504..30734)
DNA (231bp) protein (77aa)
hypothetical protein n=1 Tax=Clostridium difficile RepID=UPI00016C5F07
hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKG80486.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_040_124G1_scaffold_16_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31296..31889
DNA (594bp) protein (198aa)
Nitroreductase family protein n=176 Tax=Clostridium difficile RepID=C9XRF4_CLODC
nitroreductase
Nitroreductase family protein {ECO:0000313|EMBL:EQE59590.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Displaying items 1-30 of 181 in total

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