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L2_040_124G1_scaffold_32

Search features with annotation key words

Displaying items 1-30 of 140 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_124G1_scaffold_32_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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209..400
DNA (192bp) protein (64aa)
Uncharacterized protein n=202 Tax=Clostridium difficile RepID=C9XSF4_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQG73521.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_040_124G1_scaffold_32_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

555..1964
DNA (1410bp) protein (470aa)
putative arginine decarboxylase (EC:4.1.1.19)
Arginine decarboxylase {ECO:0000313|EMBL:CKG69894.1}; EC=4.1.1.19 {ECO:0000313|EMBL:CKG69894.1};; Putative arginine decarboxylase {ECO:0000313|EMBL:CEK00265.1}; EC=4.1.1.19 {ECO:0000313|EMBL:CEK00265.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Orn/Lys/Arg decarboxylase, major domain protein n=61 Tax=Clostridium difficile RepID=T3G203_CLODC
L2_040_124G1_scaffold_32_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2095..2784
DNA (690bp) protein (230aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Thymidylate kinase n=156 Tax=Clostridium difficile RepID=C9XSF2_CLODC
thymidylate kinase
L2_040_124G1_scaffold_32_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2787..3722
DNA (936bp) protein (312aa)
DNA polymerase III, delta prime subunit {ECO:0000313|EMBL:CDT62160.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CDT62160.1};; Putative DNA polymerase III%2C delta' subunit {ECO:0000313|EMBL:CKG69961.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CKG69961.1};; Uncharacterized protein {ECO:0000313|EMBL:CDS90146.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
DNA polymerase III, delta subunit n=166 Tax=Clostridium difficile RepID=C9XSF1_CLODC
putative DNA polymerase III, delta' subunit
L2_040_124G1_scaffold_32_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3719..4612
DNA (894bp) protein (298aa)
Polymerase suppressor protein 1/PSP1 family protein n=206 Tax=Clostridium difficile RepID=C9XSF0_CLODC
signal peptidase II
Putative YaaT-like protein involved in sporulation or related to DNA replication {ECO:0000313|EMBL:CDT62171.1}; Putative YaaT-like protein involved insporulation or related to DNA replication {ECO:0000313|EMBL:CEK00262.1}; Signal peptidase II {ECO:0000313|EMBL:CKG70006.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS90143.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_040_124G1_scaffold_32_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4690..5436
DNA (747bp) protein (249aa)
Ribosomal RNA adenine dimethylase family protein n=164 Tax=Clostridium difficile RepID=T3G074_CLODC
methyltransferase
Ribosomal RNA adenine dimethylase family protein {ECO:0000313|EMBL:EQG73593.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_040_124G1_scaffold_32_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5437..6270
DNA (834bp) protein (278aa)
rsmI; ribosomal rna small subunit methyltransferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Ribosomal RNA small subunit methyltransferase I n=41 Tax=Clostridium difficile RepID=C9XSE8_CLODC
L2_040_124G1_scaffold_32_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6293..6997
DNA (705bp) protein (235aa)
Uncharacterized protein n=34 Tax=Clostridium difficile RepID=T2T7A1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQI74977.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
hypothetical protein
L2_040_124G1_scaffold_32_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7185..7613)
DNA (429bp) protein (143aa)
AsnC family protein n=216 Tax=Clostridium difficile RepID=C9XSE6_CLODC
AsnC family transcriptional regulator
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:EHJ32121.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_040_124G1_scaffold_32_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7650..9080)
DNA (1431bp) protein (477aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Nicotinate phosphoribosyltransferase n=2 Tax=Clostridium difficile RepID=T4P5U1_CLODI
putative nicotinate phosphribosyltransferase
L2_040_124G1_scaffold_32_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9212..9796
DNA (585bp) protein (195aa)
Spore maturation protein A n=211 Tax=Clostridium difficile RepID=C9XSE4_CLODC
spore maturation protein A
Transporter gate domain protein {ECO:0000313|EMBL:EHJ32123.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_040_124G1_scaffold_32_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9812..10333
DNA (522bp) protein (174aa)
Spore maturation protein B n=91 Tax=Clostridium difficile RepID=C9XSE3_CLODC
spmB; spore maturation protein B
Uncharacterized protein {ECO:0000313|EMBL:EFH15071.1}; TaxID=525258 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP07.;"
L2_040_124G1_scaffold_32_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


10729..12666
DNA (1938bp) protein (646aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Methionine--tRNA ligase n=112 Tax=Clostridium difficile RepID=G6BSW5_CLODI
metG; methionyl-tRNA synthetase
L2_040_124G1_scaffold_32_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12696..13466
DNA (771bp) protein (257aa)
Hydrolase, TatD family protein n=147 Tax=Clostridium difficile RepID=T3G373_CLODC
putative deoxyribonuclease
Hydrolase, TatD family protein {ECO:0000313|EMBL:EQG73572.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_040_124G1_scaffold_32_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13804..14235
DNA (432bp) protein (144aa)
Putative phosphonate metabolism protein n=26 Tax=Clostridium difficile RepID=C9XSE0_CLODC
phosphonate metabolism protein
Putative phosphonate metabolism protein {ECO:0000313|EMBL:CCL24003.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_040_124G1_scaffold_32_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14250..14825
DNA (576bp) protein (192aa)
Phosphonate C-P lyase system protein PhnH n=32 Tax=Clostridium difficile RepID=T2TTX2_CLODI
phnH; putative phosphonate metabolism protein
Phosphonate metabolism protein {ECO:0000313|EMBL:CKG70338.1}; Putative phosphonate metabolism protein {ECO:0000313|EMBL:CEK00251.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_040_124G1_scaffold_32_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14828..15913
DNA (1086bp) protein (362aa)
Bacterial phosphonate metabolism family protein n=88 Tax=Clostridium difficile RepID=T2UL69_CLODI
Carbon-phosphorus lyase complex subunit {ECO:0000313|EMBL:CDS90117.1}; Putative phosphonate metabolism protein {ECO:0000313|EMBL:CDT62452.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
phnI; phosphonate metabolism protein
L2_040_124G1_scaffold_32_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15933..16802
DNA (870bp) protein (290aa)
Protein phnJ n=171 Tax=Clostridium difficile RepID=C9XSD7_CLODC
phosphonate metabolism protein
Putative phosphonate metabolism protein {ECO:0000313|EMBL:CCL31771.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_040_124G1_scaffold_32_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16795..17661
DNA (867bp) protein (289aa)
phnK; ABC-type transport system, phosphonate-specificATP-binding protein (EC:3.6.3.-)
ABC-type transport system, phosphonate-specific ATP-binding protein {ECO:0000313|EMBL:CCL31770.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCL31770.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
ABC transporter family protein n=129 Tax=Clostridium difficile RepID=T3G3A9_CLODC
L2_040_124G1_scaffold_32_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17684..18415
DNA (732bp) protein (244aa)
ABC transporter family protein n=89 Tax=Clostridium difficile RepID=T2ULB5_CLODI
phnL; phosphonate ABC transporter ATP-binding protein
Putative phosphonate C-P lyase system protein PhnL {ECO:0000313|EMBL:EHJ32132.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_040_124G1_scaffold_32_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18416..19585
DNA (1170bp) protein (390aa)
Amidohydrolase family protein n=110 Tax=Clostridium difficile RepID=T3G097_CLODC
phnM; putative carbon-phosphorus lyase complexsubunit
Putative carbon-phosphorus lyase complex subunit {ECO:0000313|EMBL:CCL23997.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_040_124G1_scaffold_32_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19589..20425
DNA (837bp) protein (279aa)
PHP domain protein n=95 Tax=Clostridium difficile RepID=T3G221_CLODC
putative polymerase/histidinol phosphatase-like
Phophoesterase {ECO:0000313|EMBL:CKG70504.1}; Putative polymerase/histidinol phosphatase-like {ECO:0000313|EMBL:CDT62575.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_040_124G1_scaffold_32_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20426..21421
DNA (996bp) protein (332aa)
iron family ABC transporter ATP-binding protein (EC:3.6.3.-)
ABC-type transport system, iron-familyATP-binding protein {ECO:0000313|EMBL:CEK00244.1}; EC=3.6.3.- {ECO:0000313|EMBL:CEK00244.1};; Iron ABC transporter ATP-binding protein {ECO:0000313|EMBL:CKG70543.1}; EC=3.6.3.19 {ECO:0000313|EMBL:CKG70543.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC transporter family protein n=117 Tax=Clostridium difficile RepID=T3G4A5_CLODC
L2_040_124G1_scaffold_32_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21439..23127
DNA (1689bp) protein (563aa)
ABC-type transport system, iron-family permease n=13 Tax=Clostridium difficile RepID=U4DBX8_CLODI
Putative 2-aminoethylphosphonate ABC transporter, permease protein {ECO:0000313|EMBL:EQE58878.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
iron family ABC transporter permease
L2_040_124G1_scaffold_32_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23103..24206
DNA (1104bp) protein (368aa)
Putative iron ABC transporter, solute-binding lipoprotein n=2 Tax=Clostridium difficile RepID=C9XSD0_CLODC
Putative 2-aminoethylphosphonate ABC transporter {ECO:0000313|EMBL:EHJ26965.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
iron ABC transporter solute-binding lipoprotein
L2_040_124G1_scaffold_32_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24643..25638
DNA (996bp) protein (332aa)
ABC-type transport system, iron-familyATP-binding protein (EC:3.6.3.-)
ABC-type transport system, iron-family ATP-binding protein {ECO:0000313|EMBL:CAJ70431.1}; EC=3.6.3.- {ECO:0000313|EMBL:CAJ70431.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
ABC transporter family protein n=39 Tax=Clostridium difficile RepID=T3G0E3_CLODC
L2_040_124G1_scaffold_32_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25656..27344
DNA (1689bp) protein (563aa)
ABC-type transport system, iron-family permease n=56 Tax=Clostridium difficile RepID=Q181C5_CLOD6
iron family ABC transporter permease
ABC-type transport system, iron-family permease {ECO:0000313|EMBL:CEK00240.1}; Iron ABC transporter permease {ECO:0000313|EMBL:CKG70673.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_040_124G1_scaffold_32_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27356..28423
DNA (1068bp) protein (356aa)
2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding family protein n=42 Tax=Clostridium difficile RepID=T3G3F3_CLODC
ABC-type transport system, iron-familyextracellular solute-binding protein
ABC-type transport system, iron-family extracellular solute-binding protein {ECO:0000313|EMBL:CAJ70429.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_040_124G1_scaffold_32_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28615..29145
DNA (531bp) protein (177aa)
Ribonuclease M5 {ECO:0000256|HAMAP-Rule:MF_01469}; EC=3.1.26.8 {ECO:0000256|HAMAP-Rule:MF_01469};; RNase M5 {ECO:0000256|HAMAP-Rule:MF_01469}; Ribosomal RNA terminal maturase M5 {ECO:0000256|HAMAP-Rule:MF_01469}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Ribonuclease M5 n=135 Tax=Clostridium difficile RepID=T3INS1_CLODC
DNA-binding protein
L2_040_124G1_scaffold_32_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


29316..30185
DNA (870bp) protein (290aa)
ksgA; 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Ribosomal RNA small subunit methyltransferase A n=103 Tax=Clostridium difficile RepID=G6BVM6_CLODI
Displaying items 1-30 of 140 in total

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