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L2_040_124G1_scaffold_43

Search features with annotation key words

Displaying items 1-30 of 109 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_124G1_scaffold_43_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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149..325
DNA (177bp) protein (59aa)
Uncharacterized protein n=197 Tax=Clostridium difficile RepID=C9XQI7_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE66670.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_040_124G1_scaffold_43_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(496..735)
DNA (240bp) protein (80aa)
Uncharacterized protein n=32 Tax=Clostridium difficile RepID=T3HLM2_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL21538.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_040_124G1_scaffold_43_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(880..1689)
DNA (810bp) protein (270aa)
MerR regulatory family protein n=145 Tax=Clostridium difficile RepID=C9XQB9_CLODC
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:EHJ28690.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_040_124G1_scaffold_43_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2473..4707
DNA (2235bp) protein (745aa)
Putative diguanylate kinase signaling protein {ECO:0000313|EMBL:CCL21536.1}; EC=2.7.7.65 {ECO:0000313|EMBL:CCL21536.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
putative diguanylate kinase signaling protein (EC:2.7.7.65)
Diguanylate cyclase domain protein n=4 Tax=Clostridium difficile RepID=T3UQJ0_CLODI
L2_040_124G1_scaffold_43_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4738..5583
DNA (846bp) protein (282aa)
dccA; diguanylate kinase signaling protein (EC:2.7.7.65)
Putative diguanylate kinase signaling protein {ECO:0000313|EMBL:CCL29498.1}; EC=2.7.7.65 {ECO:0000313|EMBL:CCL29498.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Diguanylate cyclase domain protein n=123 Tax=Clostridium difficile RepID=T2TPD0_CLODI
L2_040_124G1_scaffold_43_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5823..7556
DNA (1734bp) protein (578aa)
Putative diguanylate kinase signaling protein {ECO:0000313|EMBL:CCL21534.1}; EC=2.7.7.65 {ECO:0000313|EMBL:CCL21534.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
putative diguanylate kinase signaling protein (EC:2.7.7.65)
Diguanylate cyclase domain protein n=34 Tax=Clostridium difficile RepID=T2WLZ1_CLODI
L2_040_124G1_scaffold_43_7
unknown

Not on your lists

10091..10336
DNA (246bp) protein (82aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=U4BI04_CLODI
L2_040_124G1_scaffold_43_8
unknown

Not on your lists

comp(10469..10591)
DNA (123bp) protein (41aa)
Uncharacterized protein n=105 Tax=Clostridium difficile RepID=G6BWR2_CLODI
L2_040_124G1_scaffold_43_9
Bacillus manliponensis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10833..11222)
DNA (390bp) protein (130aa)
Uncharacterized protein n=2 Tax=Clostridium difficile PF2_CLODI">RepID=T4PPF2_CLODI
Uncharacterized protein {ECO:0000313|EMBL:KEK17267.1}; TaxID=574376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus manliponensis.;"
hypothetical Protein
L2_040_124G1_scaffold_43_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11372..11641
DNA (270bp) protein (90aa)
Uncharacterized protein n=38 Tax=Clostridium difficile RepID=T2XNY4_CLODI
Putative integrase {ECO:0000313|EMBL:CCL29496.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
integrase
L2_040_124G1_scaffold_43_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12507..13862
DNA (1356bp) protein (452aa)
MatE family protein n=27 Tax=Clostridium difficile RepID=T2XNX3_CLODI
putative drug/sodium antiporter, MATE family
Putative drug/sodium antiporter, MATE family {ECO:0000313|EMBL:CCL29494.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_040_124G1_scaffold_43_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13980..14648)
DNA (669bp) protein (223aa)
MJ0570 uncharacterized domain protein n=7 Tax=Clostridium difficile RepID=G6B9S3_CLODI
ATP-binding protein
Putative ATP-binding protein {ECO:0000313|EMBL:CBE03687.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L2_040_124G1_scaffold_43_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14715..15143)
DNA (429bp) protein (143aa)
Uncharacterized protein n=165 Tax=Clostridium difficile RepID=G6B9S2_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ31998.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L2_040_124G1_scaffold_43_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15250..15843
DNA (594bp) protein (198aa)
Uncharacterized protein n=18 Tax=Clostridium difficile RepID=G6B9S1_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ28680.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_040_124G1_scaffold_43_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15911..16897
DNA (987bp) protein (329aa)
Radical SAM protein family n=8 Tax=Clostridium difficile RepID=G6BWQ4_CLODI
Putative Fe-S oxidoreductase {ECO:0000313|EMBL:CDS86318.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
radical SAM protein
L2_040_124G1_scaffold_43_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17168..18112)
DNA (945bp) protein (315aa)
EamA-like transporter family protein n=79 Tax=Clostridium difficile RepID=T2U6J3_CLODI
EamA-like transporter family protein {ECO:0000313|EMBL:EQG77570.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
hypothetical protein
L2_040_124G1_scaffold_43_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18428..19858
DNA (1431bp) protein (477aa)
PAS domain S-box protein n=74 Tax=Clostridium difficile RepID=G6BWQ2_CLODI
Sensory box protein {ECO:0000313|EMBL:EQI00627.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
sigma-54 dependent regulatory protein
L2_040_124G1_scaffold_43_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20058..20642
DNA (585bp) protein (195aa)
Uncharacterized protein n=216 Tax=Clostridium difficile RepID=C9XQ47_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE03677.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L2_040_124G1_scaffold_43_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20736..21515)
DNA (780bp) protein (260aa)
Putative hydrolase, HAD superfamily, subfamily IIB {ECO:0000313|EMBL:CCL29486.1}; EC=3.1.3.- {ECO:0000313|EMBL:CCL29486.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
HAD hydrolase, IIB family protein n=206 Tax=Clostridium difficile RepID=C9XQ46_CLODC
hydrolase
L2_040_124G1_scaffold_43_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21573..22829)
DNA (1257bp) protein (419aa)
Putative competence-damage inducible protein n=20 Tax=Clostridium difficile RepID=T2ZP09_CLODI
competence damage-inducible protein A
Putative competence-damage inducible protein {ECO:0000256|HAMAP-Rule:MF_00226}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_040_124G1_scaffold_43_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23087..23986
DNA (900bp) protein (300aa)
ddl; D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
D-alanine--D-alanine ligase n=169 Tax=Clostridium difficile RepID=C9XQ44_CLODC
L2_040_124G1_scaffold_43_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24010..25458
DNA (1449bp) protein (483aa)
Bacterial regulatory s, gntR family protein n=20 Tax=Clostridium difficile RepID=T2YGB7_CLODI
GntR family transcriptional regulator
Bacterial regulatory s, gntR family protein {ECO:0000313|EMBL:EQG77595.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_040_124G1_scaffold_43_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25517..26323
DNA (807bp) protein (269aa)
Uncharacterized protein n=152 Tax=Clostridium difficile RepID=G6BWP6_CLODI
hypothetical protein
Putative exported protein {ECO:0000313|EMBL:CBE03667.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L2_040_124G1_scaffold_43_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26349..28268
DNA (1920bp) protein (640aa)
ABC transporter ATP-binding protein (EC:3.6.3.-)
Heme ABC exporter, ATP-binding protein CcmA n=6 Tax=Clostridium difficile RepID=T3HJN9_CLODC
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CKH02886.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_040_124G1_scaffold_43_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28510..28857)
DNA (348bp) protein (116aa)
Coenzyme PQQ synthesis D family protein n=137 Tax=Clostridium difficile RepID=C9XQ40_CLODC
hypothetical protein
Coenzyme PQQ synthesis D family protein {ECO:0000313|EMBL:EQG77676.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_040_124G1_scaffold_43_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28844..30820)
DNA (1977bp) protein (659aa)
Oligopeptide transporter, OPT family n=43 Tax=Clostridium difficile RepID=G6BWP3_CLODI
Putative oligopeptide transporter {ECO:0000313|EMBL:CBE03663.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
oligopeptide transporter
L2_040_124G1_scaffold_43_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31183..33372)
DNA (2190bp) protein (730aa)
Amino acid adenylation domain protein n=109 Tax=Clostridium difficile RepID=T2TMD7_CLODI
Putative synthetase {ECO:0000313|EMBL:CCL21508.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
nonribosomal peptide synthetase
L2_040_124G1_scaffold_43_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33703..34434
DNA (732bp) protein (244aa)
glpQ; Glycerophosphoryl diester phosphodiesterase (EC:3.1.4.46)
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:CCL21507.1}; EC=3.1.4.46 {ECO:0000313|EMBL:CCL21507.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Glycerophosphoryl diester phosphodiesterase n=83 Tax=Clostridium difficile RepID=T2TL81_CLODI
L2_040_124G1_scaffold_43_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34514..35149
DNA (636bp) protein (212aa)
Uncharacterized protein n=121 Tax=Clostridium difficile RepID=G6B9Q6_CLODI
hypothetical protein
Isochorismatase family protein {ECO:0000313|EMBL:EQI00615.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L2_040_124G1_scaffold_43_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35400..35993)
DNA (594bp) protein (198aa)
Uncharacterized protein n=207 Tax=Clostridium difficile RepID=C9XPX8_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CEJ97985.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Displaying items 1-30 of 109 in total

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