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L2_040_124G1_scaffold_112

Search features with annotation key words

Displaying items 1-30 of 83 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_124G1_scaffold_112_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(41..550)
DNA (510bp) protein (170aa)
DNA-binding protein n=4 Tax=Bifidobacterium RepID=E4NYK1_BIFBP
DNA-binding protein
Putative transcriptional regulator {ECO:0000313|EMBL:BAQ97381.1}; Uncharacterized protein {ECO:0000313|EMBL:ERI84101.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_040_124G1_scaffold_112_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(582..1217)
DNA (636bp) protein (212aa)
DNA-binding protein n=4 Tax=Bifidobacterium RepID=E4NYK1_BIFBP
DNA-binding protein
DNA-binding protein {ECO:0000313|EMBL:KFI42281.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_040_124G1_scaffold_112_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1371..1685
DNA (315bp) protein (105aa)
Type II restriction-modification system restriction subunit n=4 Tax=Bifidobacterium RepID=E4NYK0_BIFBP
type II restriction-modification system restriction subunit
Truncated endonuclease {ECO:0000313|EMBL:BAQ97380.1}; Uncharacterized protein {ECO:0000313|EMBL:ERI84102.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_040_124G1_scaffold_112_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1996..4176)
DNA (2181bp) protein (727aa)
type II restriction-modification system restriction subunit (EC:3.2.1.23)
Type II restriction-modification system restriction subunit n=2 Tax=Bifidobacterium RepID=E4NYJ9_BIFBP
Beta-galactosidase {ECO:0000313|EMBL:BAQ97379.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_040_124G1_scaffold_112_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4227..4355)
DNA (129bp) protein (43aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4V7D5_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI84104.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
beta-galactosidase
L2_040_124G1_scaffold_112_6
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4648..7116)
DNA (2469bp) protein (823aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GER9_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22885.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
metallophosphoesterase
L2_040_124G1_scaffold_112_7
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7662..8417
DNA (756bp) protein (252aa)
IS1557 family transposase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GMI8_9BIFI
IS1557 family transposase {ECO:0000313|EMBL:CDB22884.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
IS1557 family transposase
L2_040_124G1_scaffold_112_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8574..8822)
DNA (249bp) protein (83aa)
Glutaredoxin-like protein n=3 Tax=Bifidobacterium bifidum RepID=E3ELK8_BIFBS
grxC; glutaredoxin
Glutaredoxin-like protein {ECO:0000313|EMBL:ADO52403.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_124G1_scaffold_112_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8971..9930)
DNA (960bp) protein (320aa)
Ribonuclease BN-like family n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ELK7_BIFBS
ribonuclease BN-like family
Ribonuclease BN-like family {ECO:0000313|EMBL:ADO52402.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_124G1_scaffold_112_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9952..10509
DNA (558bp) protein (186aa)
thioredoxin peroxidase (EC:1.11.1.15)
Thioredoxin-dependent thiol peroxidase n=6 Tax=Bifidobacterium bifidum RepID=E3ELK6_BIFBS
Peroxiredoxin bcp family protein {ECO:0000313|EMBL:ERI84111.1}; Thioredoxin-dependent thiol peroxidase {ECO:0000313|EMBL:BAQ97374.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_040_124G1_scaffold_112_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10584..10838)
DNA (255bp) protein (85aa)
ABC transporter related protein n=4 Tax=Bifidobacterium bifidum RepID=E4NYJ3_BIFBP
ABC transporter
Uncharacterized protein {ECO:0000313|EMBL:ERI84113.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_040_124G1_scaffold_112_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11004..11645
DNA (642bp) protein (214aa)
upp; uracil phosphoribosyl transferase (EC:2.4.2.9)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Uracil phosphoribosyltransferase n=6 Tax=Bifidobacterium bifidum RepID=E3ELK4_BIFBS
L2_040_124G1_scaffold_112_13
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11879..12358
DNA (480bp) protein (160aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Ribosomal RNA large subunit methyltransferase H n=6 Tax=Bifidobacterium RepID=E4NYJ1_BIFBP
hypothetical protein
L2_040_124G1_scaffold_112_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12375..15794)
DNA (3420bp) protein (1140aa)
Permease protein of ABC transporter system n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ELK2_BIFBS
Permease protein of ABC transporter system {ECO:0000313|EMBL:ADO52397.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
ABC transporter permease
L2_040_124G1_scaffold_112_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15803..16504)
DNA (702bp) protein (234aa)
ATP-binding protein of ABC transporter system n=7 Tax=Bifidobacterium bifidum RepID=E3ELK1_BIFBS
ABC transporter ATP-binding protein
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:EKE49815.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_040_124G1_scaffold_112_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16642..17211
DNA (570bp) protein (190aa)
Putative HTH-type transcriptional regulator n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2H759_BIFBI
Putative HTH-type transcriptional regulator {ECO:0000313|EMBL:EKE49816.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
yxbF; putative HTH-type transcriptional regulator
L2_040_124G1_scaffold_112_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17776..17955
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V7C1_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR49528.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_040_124G1_scaffold_112_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17952..19448
DNA (1497bp) protein (499aa)
Aap Amino acid permease n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6G9C0_9BIFI
Amino acid permease {ECO:0000313|EMBL:EKE49817.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
aap1; amino acid permease
L2_040_124G1_scaffold_112_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19745..23623
DNA (3879bp) protein (1293aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
ebgA; evolved beta-galactosidase subunit alpha (EC:3.2.1.23)
Beta-galactosidase P1 n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HQW2_BIFBI
L2_040_124G1_scaffold_112_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23996..24985
DNA (990bp) protein (330aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=I3WFS7_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI42265.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_040_124G1_scaffold_112_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25422..26312)
DNA (891bp) protein (297aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Ketol-acid reductoisomerase n=4 Tax=Bifidobacterium RepID=E4V7B6_BIFBI
ilvC2; ketol-acid reductoisomerase
L2_040_124G1_scaffold_112_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26731..27600)
DNA (870bp) protein (290aa)
ilvC; ketol-acid reductoisomerase/2-dehydropantoate 2-reductase ilvC (EC:1.1.1.86)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Ketol-acid reductoisomerase n=7 Tax=Bifidobacterium bifidum RepID=E3ELJ5_BIFBS
L2_040_124G1_scaffold_112_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27847..29217)
DNA (1371bp) protein (457aa)
Transporter, MFS superfamily n=2 Tax=Bifidobacterium bifidum RepID=E4NYI2_BIFBP
MFS transporter, metabolite:H+ symporter (MHS) family protein {ECO:0000313|EMBL:EFR49521.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
MFS superfamily transporter
L2_040_124G1_scaffold_112_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29810..31495)
DNA (1686bp) protein (562aa)
Transporter, major facilitator family protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DW51_BIFBI
ScrT Sucrose transporter {ECO:0000313|EMBL:KFI42261.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
putative transmembrane protein
L2_040_124G1_scaffold_112_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31546..31977)
DNA (432bp) protein (144aa)
sucrose phosphorylase (EC:2.4.1.7)
Sucrose phosphorylase {ECO:0000313|EMBL:AFL03734.1}; EC=2.4.1.7 {ECO:0000313|EMBL:AFL03734.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
ScrP Sucrose phosphorylase n=3 Tax=Bifidobacterium bifidum RepID=E4NYI0_BIFBP
L2_040_124G1_scaffold_112_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32060..33106)
DNA (1047bp) protein (349aa)
ScrR Transcriptional regulator, LacI family n=3 Tax=Bifidobacterium bifidum RepID=E4NYH9_BIFBP
rbsR; ribose operon repressor
ScrR Transcriptional regulator, LacI family {ECO:0000313|EMBL:KFI42259.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_040_124G1_scaffold_112_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33266..33634)
DNA (369bp) protein (123aa)
Putative fluoride ion transporter CrcB n=3 Tax=Bifidobacterium bifidum RepID=E4NYH8_BIFBP
crcB; family protein CrcB
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_040_124G1_scaffold_112_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33636..34580)
DNA (945bp) protein (315aa)
Putative fluoride ion transporter CrcB n=2 Tax=Bifidobacterium bifidum RepID=I3WFR8_BIFBI
crcB; Integral membrane protein for chromosomecondensation
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_040_124G1_scaffold_112_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34655..35941)
DNA (1287bp) protein (429aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
purA; adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M3W2_BIFBI
L2_040_124G1_scaffold_112_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36231..37298)
DNA (1068bp) protein (356aa)
Fructose-bisphosphate aldolase, class II {ECO:0000313|EMBL:EFR49513.1}; EC=4.1.2.13 {ECO:0000313|EMBL:EFR49513.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
fbaA; fructose-bisphosphate aldolase (EC:4.1.2.13)
Fructose-bisphosphate aldolase, class II n=3 Tax=Bifidobacterium bifidum RepID=E4V7A6_BIFBI
Displaying items 1-30 of 83 in total

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