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L2_040_124G1_scaffold_133

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_124G1_scaffold_133_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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2..226
DNA (225bp) protein (75aa)
Elongation factor Tu n=6 Tax=Bifidobacterium bifidum RepID=E3EN22_BIFBS
Protein Translation Elongation Factor Tu (EF-TU)
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L2_040_124G1_scaffold_133_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

471..2162
DNA (1692bp) protein (564aa)
Putative lipo protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M667_BIFBI
Putative lipo protein {ECO:0000313|EMBL:EKF16560.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
putative lipo protein
L2_040_124G1_scaffold_133_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2135..2950
DNA (816bp) protein (272aa)
Putative lipoprotein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NXU6_BIFBP
lipoprotein
LPXTG-motif cell wall anchor domain protein {ECO:0000313|EMBL:EFR50699.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_040_124G1_scaffold_133_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2951..4261)
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJ01_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04864.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_040_124G1_scaffold_133_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4801..4998
DNA (198bp) protein (66aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=K2HYB9_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53453.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_124G1_scaffold_133_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5116..5262)
DNA (147bp) protein (49aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BZI5_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83629.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_040_124G1_scaffold_133_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5279..5842
DNA (564bp) protein (188aa)
Elongation factor P n=7 Tax=Bifidobacterium RepID=E3EN18_BIFBS
efp; translation elongation factor P
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_124G1_scaffold_133_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5864..6535
DNA (672bp) protein (224aa)
N utilization substance protein B homolog n=2 Tax=Bifidobacterium bifidum RepID=E4NXU3_BIFBP
nusB; n utilization substance protein B NusB
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_040_124G1_scaffold_133_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6623..7840
DNA (1218bp) protein (406aa)
carA; carbamoyl-phosphate synthase small chain (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Carbamoyl-phosphate synthase small chain n=2 Tax=Bifidobacterium bifidum RepID=E4NXU2_BIFBP
L2_040_124G1_scaffold_133_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7833..11213
DNA (3381bp) protein (1127aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Carbamoyl-phosphate synthase large chain n=3 Tax=Bifidobacterium bifidum RepID=E3EN15_BIFBS
carB; carbamoyl-phosphate synthase large subunit
L2_040_124G1_scaffold_133_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11232..12815
DNA (1584bp) protein (528aa)
Guanylate kinase {ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|SAAS:SAAS00036702};; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
gmk; guanylate kinase (EC:2.7.4.8)
Orotidine 5'-phosphate decarboxylase n=6 Tax=Bifidobacterium RepID=E3EN14_BIFBS
L2_040_124G1_scaffold_133_12
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13059..15164)
DNA (2106bp) protein (702aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GJB3_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB24505.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L2_040_124G1_scaffold_133_13
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15251..15922)
DNA (672bp) protein (224aa)
Transcriptional regulatory protein n=6 Tax=Bifidobacterium RepID=E4NXT8_BIFBP
response regulator of two-component system
Transcriptional regulatory protein {ECO:0000313|EMBL:CDB24497.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_040_124G1_scaffold_133_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15919..17358)
DNA (1440bp) protein (480aa)
Two component system histidine kinase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I937_BIFBI
Two component system histidine kinase {ECO:0000313|EMBL:EKE51449.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
two component system histidine kinase
L2_040_124G1_scaffold_133_15
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17524..18342
DNA (819bp) protein (273aa)
Integral membrane protein n=5 Tax=Bifidobacterium RepID=I3WIZ2_BIFBI
integral membrane protein
Uncharacterized protein {ECO:0000313|EMBL:CDB24487.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_040_124G1_scaffold_133_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18445..19278
DNA (834bp) protein (278aa)
Integral membrane protein n=8 Tax=Bifidobacterium RepID=E3EN09_BIFBS
ybhL; inner membrane protein
Membrane spanning protein {ECO:0000313|EMBL:KFI43299.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_040_124G1_scaffold_133_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19459..20451
DNA (993bp) protein (331aa)
Putative membrane protein n=3 Tax=Bifidobacterium bifidum RepID=U2CHV1_BIFBI
Putative membrane protein {ECO:0000313|EMBL:ERI83618.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ98475.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
transporter drug/metabolite exporter family
L2_040_124G1_scaffold_133_18
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20572..21234)
DNA (663bp) protein (221aa)
RelA2 GTP pyrophosphokinase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GS09_9BIFI
RelA/SpoT domain containing protein
RelA2 GTP pyrophosphokinase {ECO:0000313|EMBL:CDB24479.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_040_124G1_scaffold_133_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21390..22844
DNA (1455bp) protein (485aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=2 Tax=Bifidobacterium bifidum RepID=U2CGE2_BIFBI
hypothetical protein
L2_040_124G1_scaffold_133_20
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22881..23996
DNA (1116bp) protein (372aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
tRNA dimethylallyltransferase n=2 Tax=Bifidobacterium RepID=R6GT85_9BIFI
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase
L2_040_124G1_scaffold_133_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24062..24787)
DNA (726bp) protein (242aa)
Fic Cell filamentation protein n=2 Tax=Bifidobacterium bifidum RepID=E4NXT0_BIFBP
fic2; Fic family protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53438.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_124G1_scaffold_133_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25070..27919
DNA (2850bp) protein (950aa)
DNA translocase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HBL8_BIFBI
DNA translocase {ECO:0000313|EMBL:EKE51441.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
ftsK; cell division protein FtsK
L2_040_124G1_scaffold_133_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28046..28717
DNA (672bp) protein (224aa)
pgsA; CDP-diacylglycerol--glycerol-3-phosphate3-phosphatidyl transferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:EFR50681.1}; EC=2.7.8.5 {ECO:0000313|EMBL:EFR50681.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
CDP-diacylglycerol--glycerol-3-phosphate3-phosphatidyl transferase n=4 Tax=Bifidobacterium RepID=I3WIY3_BIFBI
L2_040_124G1_scaffold_133_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28789..29334
DNA (546bp) protein (182aa)
Competence-damage protein cinA n=5 Tax=Bifidobacterium RepID=E3EN01_BIFBS
cinA; putative nucleotide-utilizing enzyme
Competence-damage protein cinA {ECO:0000313|EMBL:ADO53435.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_124G1_scaffold_133_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29395..29907
DNA (513bp) protein (171aa)
Transcriptional regulator n=4 Tax=Bifidobacterium bifidum RepID=E3EN00_BIFBS
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:EKE51438.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_040_124G1_scaffold_133_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30079..30312
DNA (234bp) protein (78aa)
Uncharacterized protein n=6 Tax=Bifidobacterium bifidum RepID=I3WIY0_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI83608.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_040_124G1_scaffold_133_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


30582..31772
DNA (1191bp) protein (397aa)
Protein RecA n=6 Tax=Bifidobacterium RepID=E3EMZ8_BIFBS
recA; recombinase A
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_040_124G1_scaffold_133_28
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31964..32389
DNA (426bp) protein (142aa)
RecX-like protein n=4 Tax=Bifidobacterium RepID=E3EMZ7_BIFBS
recX; RecX-like protein
RecX-like protein {ECO:0000313|EMBL:CDB24342.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_040_124G1_scaffold_133_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33246..33548)
DNA (303bp) protein (101aa)
ArsR family transcriptional regulator n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I920_BIFBI
ArsR family transcriptional regulator {ECO:0000313|EMBL:EKE51434.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Transcriptional regulator
L2_040_124G1_scaffold_133_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33621..33965)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VAS4_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR50673.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
Displaying items 1-30 of 55 in total

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