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L2_040_124G1_scaffold_142

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_124G1_scaffold_142_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

238..786
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CG61_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83540.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L2_040_124G1_scaffold_142_2
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

796..1413
DNA (618bp) protein (206aa)
Uncharacterized protein n=5 Tax=Bifidobacterium RepID=E4V7I1_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB22224.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_040_124G1_scaffold_142_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1838..2848
DNA (1011bp) protein (337aa)
cysK; cysteine synthase CysK (EC:4.2.1.22)
Cystathionine beta-synthase n=5 Tax=Bifidobacterium bifidum RepID=I3WJ53_BIFBI
Cystathionine beta-synthase {ECO:0000313|EMBL:ADO53507.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_124G1_scaffold_142_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2950..4137
DNA (1188bp) protein (396aa)
Cystathionine gamma-synthase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EP89_BIFBS
metB; cystathionine gamma-synthase
Cystathionine gamma-synthase {ECO:0000313|EMBL:ADO53506.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_124G1_scaffold_142_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4312..6324
DNA (2013bp) protein (671aa)
Putative ATP-dependent DNA helicase RecQ n=2 Tax=Bifidobacterium bifidum RepID=E4V7H8_BIFBI
Putative ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:EFR50748.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
recQ; ATP-dependent DNA helicase RecQ
L2_040_124G1_scaffold_142_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6492..6977
DNA (486bp) protein (162aa)
S-ribosylhomocysteine lyase {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059609}; EC=4.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059628};; AI-2 synthesis protein {ECO:0000256|HAMAP-Rule:MF_00091}; Autoinducer-2 production protein LuxS {ECO:0000256|HAMAP-Rule:MF_00091}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
S-ribosylhomocysteine lyase n=5 Tax=Bifidobacterium bifidum RepID=E3EP87_BIFBS
luxS; Autoinducer-2 production protein LuxS
L2_040_124G1_scaffold_142_7
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7209..7694
DNA (486bp) protein (162aa)
CysE Serine O-acetyltransferase n=8 Tax=Bifidobacterium RepID=E4NXZ2_BIFBP
cysE; serine O-acetyltransferase
CysE Serine O-acetyltransferase {ECO:0000313|EMBL:CDB22218.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_040_124G1_scaffold_142_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7864..9291)
DNA (1428bp) protein (476aa)
Amino acid transporter n=6 Tax=Bifidobacterium RepID=E3EP84_BIFBS
amino acid transporter
Amino acid transporter {ECO:0000313|EMBL:AFL04911.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_040_124G1_scaffold_142_9
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9526..10884
DNA (1359bp) protein (453aa)
alr; alanine racemase (EC:5.1.1.1)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Alanine racemase n=4 Tax=Bifidobacterium RepID=I3WJ47_BIFBI
L2_040_124G1_scaffold_142_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10999..12279
DNA (1281bp) protein (427aa)
Deoxyguanosinetriphosphate triphosphohydrolase (DGTPase) n=4 Tax=Bifidobacterium bifidum RepID=E3EP82_BIFBS
dgt; deoxyguanosinetriphosphate triphosphohydrolase
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000313|EMBL:EKF16248.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_040_124G1_scaffold_142_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12334..14424
DNA (2091bp) protein (697aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051044}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051045};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
DNA primase n=7 Tax=Bifidobacterium bifidum RepID=E3EP81_BIFBS
dnaG; DNA primase
L2_040_124G1_scaffold_142_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14724..15995)
DNA (1272bp) protein (424aa)
IS30 family transposase n=13 Tax=Bifidobacterium RepID=B3DPR0_BIFLD
transposase
Transposase {ECO:0000313|EMBL:KEY33123.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L2_040_124G1_scaffold_142_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16146..17015)
DNA (870bp) protein (290aa)
Transcriptional regulator n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2IMW7_BIFBI
rpiR; transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:EKE50055.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_040_124G1_scaffold_142_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17145..18425)
DNA (1281bp) protein (427aa)
Putative transcriptional regulator n=2 Tax=Bifidobacterium bifidum RepID=I3WJ43_BIFBI
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AFL04906.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_040_124G1_scaffold_142_15
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18766..19059
DNA (294bp) protein (98aa)
Uncharacterized protein n=6 Tax=Bifidobacterium RepID=E4V7G9_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB22211.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_040_124G1_scaffold_142_16
Bifidobacterium stercoris, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19433..20422
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Bifidobacterium adolescentis CAG:119 RepID=R5H1U9_9BIFI
Integral membrane protein {ECO:0000313|EMBL:KFI96674.1}; TaxID=592977 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium stercoris.;"
integral membrane protein
L2_040_124G1_scaffold_142_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20644..22608)
DNA (1965bp) protein (655aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|SAAS:SAAS00085897};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
dxs; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2IRV6_BIFBI
L2_040_124G1_scaffold_142_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22864..23853
DNA (990bp) protein (330aa)
Alcohol dehydrogenase n=2 Tax=Bifidobacterium bifidum RepID=K2I988_BIFBI
Alcohol dehydrogenase {ECO:0000313|EMBL:EKE51494.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
adh2; alcohol dehydrogenase
L2_040_124G1_scaffold_142_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23897..24394
DNA (498bp) protein (166aa)
purE; phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit PurE (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
N5-carboxyaminoimidazole ribonucleotide mutase n=7 Tax=Bifidobacterium RepID=E3EP75_BIFBS
L2_040_124G1_scaffold_142_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24378..25547
DNA (1170bp) protein (390aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit n=4 Tax=Bifidobacterium RepID=E3EP74_BIFBS
purK; phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit
L2_040_124G1_scaffold_142_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25699..26094
DNA (396bp) protein (132aa)
Ferric uptake regulator, Fur family n=4 Tax=Bifidobacterium bifidum RepID=E3EP73_BIFBS
ferric uptake regulator, Fur family
Ferric uptake regulation protein {ECO:0000313|EMBL:KFI43344.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_040_124G1_scaffold_142_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26252..26521)
DNA (270bp) protein (90aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NXX9_BIFBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI83573.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_040_124G1_scaffold_142_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26518..27318)
DNA (801bp) protein (267aa)
TIGR03943 family protein n=5 Tax=Bifidobacterium RepID=E4VAY2_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKF15407.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_040_124G1_scaffold_142_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27323..28444)
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HVC6_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE51488.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L2_040_124G1_scaffold_142_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(28653..28823)
DNA (171bp) protein (57aa)
50S ribosomal protein L32 n=2 Tax=Bifidobacterium bifidum RepID=E3EP69_BIFBS
rpmF; 50S ribosomal protein L32
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_124G1_scaffold_142_26
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28823..28945)
DNA (123bp) protein (41aa)
50S ribosomal protein L36 n=8 Tax=Bifidobacterium RepID=E3EP68_BIFBS
50S ribosomal protein L36
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_040_124G1_scaffold_142_27
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(29138..29395)
DNA (258bp) protein (86aa)
50S ribosomal protein L31 n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NXX4_BIFBP
rpmE2; 50S ribosomal protein L31
50S ribosomal protein L31 type B {ECO:0000256|HAMAP-Rule:MF_00502, ECO:0000256|SAAS:SAAS00004504}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_040_124G1_scaffold_142_28
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(29442..29747)
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=7 Tax=Bifidobacterium RepID=E4NXX3_BIFBP
rpsN; 30S ribosomal protein S14
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_040_124G1_scaffold_142_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(29824..30120)
DNA (297bp) protein (99aa)
50S ribosomal protein L28 n=2 Tax=Bifidobacterium bifidum RepID=E4NXX2_BIFBP
rpmB; 50S ribosomal protein L28
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_040_124G1_scaffold_142_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30170..30937
DNA (768bp) protein (256aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NXX1_BIFBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI43335.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Displaying items 1-30 of 54 in total

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