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L2_040_124G1_scaffold_149

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_124G1_scaffold_149_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(324..1172)
DNA (849bp) protein (283aa)
EDD, DegV family domain protein n=143 Tax=Clostridium difficile RepID=T3IBR3_CLODC
uncharacterised protein, DegV family
EDD, DegV family domain protein {ECO:0000313|EMBL:EQE69568.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_040_124G1_scaffold_149_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1208..1678)
DNA (471bp) protein (157aa)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=210 Tax=Clostridium difficile RepID=C9XKK7_CLODC
RNA methylase
L2_040_124G1_scaffold_149_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1872..3041)
DNA (1170bp) protein (390aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
Endonuclease III n=13 Tax=Clostridium difficile RepID=T2VV57_CLODI
endonuclease III
L2_040_124G1_scaffold_149_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3239..5476)
DNA (2238bp) protein (746aa)
Lon protease (S16) C-terminal proteolytic domain protein n=3 Tax=Clostridium difficile RepID=T2V1L6_CLODI
Putative ATP-dependent protease {ECO:0000313|EMBL:CAJ67397.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
putative ATP-dependent protease
L2_040_124G1_scaffold_149_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5582..6562)
DNA (981bp) protein (327aa)
Epoxyqueuosine reductase n=2 Tax=Clostridium difficile RepID=T4RWY6_CLODI
Putative iron-sulfur cluster-binding protein {ECO:0000313|EMBL:CDT78113.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
iron-sulfur cluster-binding protein
L2_040_124G1_scaffold_149_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6982..7176)
DNA (195bp) protein (65aa)
Uncharacterized protein n=13 Tax=Clostridium difficile RepID=T2TPT4_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQG77834.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
conserved hypothetical protein
L2_040_124G1_scaffold_149_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7325..7741
DNA (417bp) protein (139aa)
Crossover junction endodeoxyribonuclease RusA n=4 Tax=Clostridium difficile RepID=G6BAD5_CLODI
Crossover junction endodeoxyribonuclease RusA {ECO:0000313|EMBL:EHJ28295.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
endonuclease
L2_040_124G1_scaffold_149_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7998..8993)
DNA (996bp) protein (332aa)
putative aldo/keto reductase ; putativeferredoxin (EC:1.1.1.274)
Aldo/keto reductase family protein n=144 Tax=Clostridium difficile RepID=T3IGY0_CLODC
4Fe-4S binding domain protein {ECO:0000313|EMBL:EHJ28294.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L2_040_124G1_scaffold_149_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9277..10113)
DNA (837bp) protein (279aa)
nfo; endonuclease IV (EC:3.1.21.2)
Probable endonuclease 4 {ECO:0000256|HAMAP-Rule:MF_00152}; EC=3.1.21.2 {ECO:0000256|HAMAP-Rule:MF_00152};; Endodeoxyribonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; Endonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Probable endonuclease 4 n=136 Tax=Clostridium difficile RepID=END4_CLOD6
L2_040_124G1_scaffold_149_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10601..11164)
DNA (564bp) protein (188aa)
Bacterial regulatory , arsR family protein n=214 Tax=Clostridium difficile RepID=C9XKK0_CLODC
hypothetical protein
Bacterial regulatory , arsR family protein {ECO:0000313|EMBL:EQG77777.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_040_124G1_scaffold_149_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11262..12191)
DNA (930bp) protein (310aa)
glutaminase (EC:3.5.1.2)
Glutaminase {ECO:0000256|HAMAP-Rule:MF_00313, ECO:0000256|SAAS:SAAS00041476}; EC=3.5.1.2 {ECO:0000256|HAMAP-Rule:MF_00313, ECO:0000256|SAAS:SAAS00041476};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Glutaminase n=1 Tax=Clostridium difficile P3 RepID=T4IHC8_CLODI
L2_040_124G1_scaffold_149_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12980..14647)
DNA (1668bp) protein (556aa)
putative uridine kinase (EC:2.7.1.48)
Phosphoribulokinase/uridine kinase {ECO:0000313|EMBL:CKH67183.1}; EC=6.1.1.3 {ECO:0000313|EMBL:CKH67183.1};; Putative uridine kinase {ECO:0000313|EMBL:CDT77059.1}; EC=2.7.1.48 {ECO:0000313|EMBL:CDT77059.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Phosphoribulokinase / Uridine kinase family protein n=176 Tax=Clostridium difficile RepID=T3IC48_CLODC
L2_040_124G1_scaffold_149_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14721..15476)
DNA (756bp) protein (252aa)
Xylose isomerase-like TIM barrel family protein n=149 Tax=Clostridium difficile RepID=T3IDQ3_CLODC
putative sugar isomerase / endonuclease
Putative sugar isomerase / endonuclease {ECO:0000313|EMBL:CAJ67389.2}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_040_124G1_scaffold_149_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15486..16022)
DNA (537bp) protein (179aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Signal peptidase I n=212 Tax=Clostridium difficile RepID=C9XKJ6_CLODC
singal peptidase I
L2_040_124G1_scaffold_149_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16188..16724)
DNA (537bp) protein (179aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Signal peptidase I n=211 Tax=Clostridium difficile RepID=C9XKJ5_CLODC
signal peptidase I
L2_040_124G1_scaffold_149_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16824..18134)
DNA (1311bp) protein (437aa)
NOL1/NOP2/sun family RNA methylase domain protein n=106 Tax=Clostridium difficile RepID=C9XKJ4_CLODC
methylase
Putative RNA methyltransferase {ECO:0000313|EMBL:CCL32405.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_040_124G1_scaffold_149_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18213..18929)
DNA (717bp) protein (239aa)
Uncharacterized protein n=150 Tax=Clostridium difficile RepID=G6B2H5_CLODI
sleB; spore-cortex-lytic protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ34828.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_040_124G1_scaffold_149_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19174..20445
DNA (1272bp) protein (424aa)
Spore cortex-lytic enzyme pre-pro-form n=192 Tax=Clostridium difficile RepID=Q188Z5_CLOD6
sleC; spore cortex-lytic enzyme pre-pro-form
Peptidoglycan binding domain protein {ECO:0000313|EMBL:EHJ34826.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_040_124G1_scaffold_149_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20912..21568)
DNA (657bp) protein (219aa)
Uncharacterized protein n=136 Tax=Clostridium difficile RepID=G6B2H2_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCL32402.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_040_124G1_scaffold_149_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22760..23170)
DNA (411bp) protein (137aa)
Uncharacterized protein n=103 Tax=Clostridium difficile RepID=T3IHQ7_CLODC
conserved hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKH67472.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ97081.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_040_124G1_scaffold_149_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23386..24768)
DNA (1383bp) protein (461aa)
BlaR1 peptidase M56 family protein n=18 Tax=Clostridium difficile RepID=T2V615_CLODI
BlaR1 peptidase M56 family protein {ECO:0000313|EMBL:EQE69617.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
putative penicillin-binding peptidaseBlaR1-like,M56 family
L2_040_124G1_scaffold_149_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24779..25138)
DNA (360bp) protein (120aa)
Penicillinase repressor family protein n=204 Tax=Clostridium difficile RepID=C9XKI8_CLODC
penicillin-binding protein repressor
Transcriptional regulator, beta-lactams repressor {ECO:0000313|EMBL:CCK96456.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
L2_040_124G1_scaffold_149_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25343..26140)
DNA (798bp) protein (266aa)
Uncharacterized protein n=48 Tax=Clostridium difficile RepID=T2WCX3_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CBE02286.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L2_040_124G1_scaffold_149_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26583..27194)
DNA (612bp) protein (204aa)
Uncharacterized protein n=201 Tax=Clostridium difficile RepID=Q188Y7_CLOD6
lipoprotein
Uncharacterized protein {ECO:0000313|EMBL:CCL32373.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_040_124G1_scaffold_149_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27286..28275)
DNA (990bp) protein (330aa)
putative ornithine cyclodeaminase (EC:4.3.1.12)
Oxidoreductase , NAD-binding Rossmann fold family protein n=131 Tax=Clostridium difficile RepID=T3IEK8_CLODC
Oxidoreductase , NAD-binding Rossmann fold family protein {ECO:0000313|EMBL:EQG77673.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_040_124G1_scaffold_149_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28342..29205)
DNA (864bp) protein (288aa)
Uncharacterized protein n=163 Tax=Clostridium difficile RepID=C9XKI4_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQG78004.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_040_124G1_scaffold_149_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29311..29907)
DNA (597bp) protein (199aa)
cheB; putative protein-glutamate methylesterase (EC:3.1.1.61)
Uncharacterized protein n=63 Tax=Clostridium difficile RepID=U3WQW7_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL24627.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_040_124G1_scaffold_149_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29947..30750)
DNA (804bp) protein (268aa)
cheR; Methyl-accepting chemotaxis proteinsmethyltransferase, MCP family (EC:2.1.1.80)
Methyltransferase domain protein n=124 Tax=Clostridium difficile RepID=T3IER0_CLODC
CheR methyltransferase, SAM binding domain protein {ECO:0000313|EMBL:EHJ34816.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_040_124G1_scaffold_149_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30786..31226)
DNA (441bp) protein (147aa)
CheW-like domain protein n=182 Tax=Clostridium difficile RepID=C9XKI1_CLODC
chemotaxis protein
Chemotaxis protein CheW {ECO:0000313|EMBL:CCL24625.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_040_124G1_scaffold_149_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31239..33371)
DNA (2133bp) protein (711aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Chemotaxis protein CheA n=37 Tax=Clostridium difficile RepID=U3YSD8_CLODI
cheA; chemotaxis protein
Displaying items 1-30 of 56 in total

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