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L2_040_124G1_scaffold_169

Search features with annotation key words

Displaying items 1-30 of 67 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_124G1_scaffold_169_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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346..837
DNA (492bp) protein (164aa)
SsrA-binding protein n=213 Tax=Clostridium difficile RepID=SSRP_CLOD6
smpB; SsrA-binding protein
SsrA-binding protein {ECO:0000255|HAMAP-Rule:MF_00023}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_040_124G1_scaffold_169_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1487..2179
DNA (693bp) protein (231aa)
Type i restriction enzyme r subunit n=1 Tax=Clostridium difficile CD002 RepID=U3W3D0_CLODI
type i restriction enzyme r subunit
Helicase protein {ECO:0000313|EMBL:EHJ34444.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L2_040_124G1_scaffold_169_3
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2303..2977
DNA (675bp) protein (225aa)
PD-(D/E)XK nuclease superfamily protein n=1 Tax=Clostridium sordellii ATCC 9714 RepID=T0CTJ3_CLOSO
Uncharacterised protein {ECO:0000313|EMBL:CEN69165.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
L2_040_124G1_scaffold_169_4
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3242..3421
DNA (180bp) protein (60aa)
PD-(D/E)XK nuclease superfamily protein n=1 Tax=Clostridium sordellii ATCC 9714 RepID=T0CTJ3_CLOSO
PD-(D/E)XK nuclease superfamily protein {ECO:0000313|EMBL:EPZ57432.1}; TaxID=1292036 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] sordellii ATCC 9714.;"
L2_040_124G1_scaffold_169_5
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3604..3906
DNA (303bp) protein (101aa)
Uncharacterized protein n=29 Tax=Clostridium difficile RepID=T2UKQ1_CLODI
Uncharacterised protein {ECO:0000313|EMBL:CEQ15121.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
L2_040_124G1_scaffold_169_6
unknown

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3951..4169
DNA (219bp) protein (73aa)

This feature has no annotations

L2_040_124G1_scaffold_169_7
unknown

Not on your lists

4308..4457
DNA (150bp) protein (50aa)

This feature has no annotations

L2_040_124G1_scaffold_169_8
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4544..6118
DNA (1575bp) protein (525aa)
Recombinase family protein n=29 Tax=Clostridium difficile RepID=T2ULD4_CLODI
Site-specific recombinase {ECO:0000313|EMBL:CEP85327.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
resolvase domain-containing protein
L2_040_124G1_scaffold_169_9
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6260..7552
DNA (1293bp) protein (431aa)
Modification methylase FokI {ECO:0000313|EMBL:CEQ18974.1}; EC=2.1.1.72 {ECO:0000313|EMBL:CEQ18974.1};; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
D12 class N6 adenine-specific DNA methyltransferase family protein n=28 Tax=Clostridium difficile RepID=T2UU74_CLODI
DNA modification methyltransferase
L2_040_124G1_scaffold_169_10
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7555..9174
DNA (1620bp) protein (540aa)
DNA methylase family protein n=29 Tax=Clostridium difficile RepID=T2UXH8_CLODI
Putative methyltransferase {ECO:0000313|EMBL:CEQ18975.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
DNA modification methyltransferase
L2_040_124G1_scaffold_169_11
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9230..9571)
DNA (342bp) protein (114aa)
Uncharacterised protein {ECO:0000313|EMBL:CEQ18976.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
L2_040_124G1_scaffold_169_12
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9645..10790)
DNA (1146bp) protein (382aa)
Uncharacterized protein n=30 Tax=Clostridium difficile RepID=T3CF58_CLODI
Uncharacterised protein {ECO:0000313|EMBL:CEQ18977.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
L2_040_124G1_scaffold_169_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12489..12590)
DNA (102bp) protein (34aa)
Uncharacterised protein {ECO:0000313|EMBL:CKG82530.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_040_124G1_scaffold_169_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12823..13395)
DNA (573bp) protein (191aa)
Sortase family protein n=14 Tax=Clostridium difficile RepID=T3EF37_CLODI
Sortase B (Modular protein) {ECO:0000313|EMBL:CDS89087.1}; Sortase, SrtB family {ECO:0000313|EMBL:CDS89701.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
peptidase C60B
L2_040_124G1_scaffold_169_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13664..17206
DNA (3543bp) protein (1181aa)
Putative serine-aspartate repeat-containing protein SdrF n=1 Tax=Clostridium difficile E16 RepID=U3W7L4_CLODI
cbpA; putative serine-aspartate repeat-containingprotein SdrF
Putative serine-aspartate repeat-containingprotein SdrF {ECO:0000313|EMBL:CEJ99787.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_040_124G1_scaffold_169_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17968..18930
DNA (963bp) protein (321aa)
Transcriptional regulator family protein n=20 Tax=Clostridium difficile RepID=T2X1A4_CLODI
Transcriptional regulator, DeoR family
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:CCL23531.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_040_124G1_scaffold_169_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19009..19638
DNA (630bp) protein (210aa)
DJ-1/PfpI family protein n=92 Tax=Clostridium difficile RepID=T3G5G9_CLODC
ThiJ/pfpI family protein
DJ-1/PfpI family protein {ECO:0000313|EMBL:EQI76556.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
L2_040_124G1_scaffold_169_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20470..20883
DNA (414bp) protein (138aa)
Putative membrane protein n=7 Tax=Clostridium difficile RepID=T2VJU1_CLODI
Putative membrane protein {ECO:0000313|EMBL:CDS89077.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS89697.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative membrane protein
L2_040_124G1_scaffold_169_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20951..21367
DNA (417bp) protein (139aa)
Uncharacterized protein n=149 Tax=Clostridium difficile RepID=G6BYV5_CLODI
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:EQG74443.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_040_124G1_scaffold_169_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21380..21580
DNA (201bp) protein (67aa)
Helix-turn-helix family protein n=183 Tax=Clostridium difficile RepID=T3G4W5_CLODC
transcriptional regulator
Helix-turn-helix family protein {ECO:0000313|EMBL:EQI76599.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
L2_040_124G1_scaffold_169_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21966..22136
DNA (171bp) protein (57aa)
Uncharacterized protein n=30 Tax=Clostridium difficile RepID=G6BYV3_CLODI
Putative abc transporter permease y4fn domain protein {ECO:0000313|EMBL:EQG74236.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
ABC transporter permease
L2_040_124G1_scaffold_169_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22679..23557
DNA (879bp) protein (293aa)
Fructose-bisphosphate aldolase Fba {ECO:0000313|EMBL:CKG82889.1}; EC=4.1.2.13 {ECO:0000313|EMBL:CKG82889.1};; EC=4.1.2.40 {ECO:0000313|EMBL:CKG82889.1};; Putative fructose-1-6-bisphosphate aldolase {ECO:0000313|EMBL:CEJ99776.1}; EC=4.1.2.13 {ECO:0000313|EMBL:CEJ99776.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Ketose-bisphosphate aldolase family protein n=43 Tax=Clostridium difficile RepID=T2TDD3_CLODI
hypothetical protein
L2_040_124G1_scaffold_169_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23593..25488
DNA (1896bp) protein (632aa)
PTS system, fructose subfamily, IIA component domain protein {ECO:0000313|EMBL:EQG74219.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EQG74219.1};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
PTS system, fructose-like IIABC component (EC:2.7.1.69)
PTS system, fructose subfamily, IIA component domain protein n=140 Tax=Clostridium difficile RepID=T2TAG0_CLODI
L2_040_124G1_scaffold_169_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25756..27663
DNA (1908bp) protein (636aa)
PRD domain protein n=18 Tax=Clostridium difficile RepID=T2T9G0_CLODI
PRD domain protein {ECO:0000313|EMBL:EQG74197.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
transcription antiterminator
L2_040_124G1_scaffold_169_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27653..28102
DNA (450bp) protein (150aa)
PTS system, fructose subfamily, IIA component domain protein n=55 Tax=Clostridium difficile RepID=T3G521_CLODC
PTS system fructose-like transporter subunit IIA
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 {ECO:0000313|EMBL:EHJ34379.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L2_040_124G1_scaffold_169_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28202..29089
DNA (888bp) protein (296aa)
Cupin domain protein n=105 Tax=Clostridium difficile RepID=T3G5U4_CLODC
AraC family transcriptional regulator
Cupin domain protein {ECO:0000313|EMBL:EQE59761.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_040_124G1_scaffold_169_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29494..30942
DNA (1449bp) protein (483aa)
6-phospho-beta-glucosidase {ECO:0000313|EMBL:CDT60766.1}; EC=3.2.1.86 {ECO:0000313|EMBL:CDT60766.1};; Aryl-phospho-beta-d-glucosidase {ECO:0000313|EMBL:CDS89678.1}; EC=3.2.1.86 {ECO:0000313|EMBL:CDS89678.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Aryl-phospho-beta-D-glucosidase BglH n=24 Tax=Clostridium difficile RepID=T2UD79_CLODI
acsB3; 6-phospho-beta-glucosidase
L2_040_124G1_scaffold_169_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30968..33358
DNA (2391bp) protein (797aa)
Glycosyl hydrolase/phosphorylase (EC:2.4.1.-)
Glycosyl hydrolase/phosphorylase {ECO:0000313|EMBL:CAJ70022.1}; EC=2.4.1.- {ECO:0000313|EMBL:CAJ70022.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Glycosyl hydrolase family 65 central catalytic domain protein n=1 Tax=Clostridium difficile CD113 RepID=T4Y6V1_CLODI
L2_040_124G1_scaffold_169_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33360..34031
DNA (672bp) protein (224aa)
Beta-phosphoglucomutase (Beta-D-Glucose 1,6-phosphomutase) {ECO:0000313|EMBL:CDT60796.1}; EC=5.4.2.6 {ECO:0000313|EMBL:CDT60796.1};; Putative glucose-1-phosphate phosphodismutase, beta-phosphoglucomutase {ECO:0000313|EMBL:CDS89673.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
pgmB1; Beta-phosphoglucomutase (beta-D-Glucose1,6-phosphomutase) (EC:5.4.2.6)
Beta-phosphoglucomutase n=8 Tax=Clostridium difficile RepID=T2VK79_CLODI
L2_040_124G1_scaffold_169_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34070..35455
DNA (1386bp) protein (462aa)
PTS system, beta-glucoside-like IIBC component {ECO:0000313|EMBL:CDS89045.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CDS89045.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
PTS system, beta-glucoside-like IIBC component (EC:2.7.1.69)
PTS system, glucose-like IIB component domain protein n=7 Tax=Clostridium difficile RepID=T2VJG3_CLODI
Displaying items 1-30 of 67 in total

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