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L2_040_124G1_scaffold_224

Search features with annotation key words

Displaying items 1-30 of 94 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_124G1_scaffold_224_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..533)
DNA (531bp) protein (177aa)
Lacto-N-biose phosphorylase {ECO:0000313|EMBL:BAD80752.1}; EC=2.4.1.211 {ECO:0000313|EMBL:BAD80752.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Lacto-N-biose phosphorylase (Fragment) n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M6F3_BIFBI
lnbP; lacto-N-biose phorylase
L2_040_124G1_scaffold_224_2
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(785..1735)
DNA (951bp) protein (317aa)
Multiple sugar transport system, permease protein n=3 Tax=Bifidobacterium RepID=E3EQ56_BIFBS
permease
Permease {ECO:0000313|EMBL:CDB22655.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_040_124G1_scaffold_224_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1735..2706)
DNA (972bp) protein (324aa)
Multiple sugar transport system, permease protein n=2 Tax=Bifidobacterium bifidum RepID=E3EQ57_BIFBS
permease
Multiple sugar transport system, permease protein {ECO:0000313|EMBL:ADO53207.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_124G1_scaffold_224_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2883..4190)
DNA (1308bp) protein (436aa)
Galacto-N-biose/lacto-N-biose I-binding protein n=1 Tax=Bifidobacterium bifidum RepID=G4WUD1_BIFBI
Galacto-N-biose/lacto-N-biose I-binding protein {ECO:0000313|EMBL:AEP83685.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
sugar ABC transporter substrate-binding protein
L2_040_124G1_scaffold_224_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4683..6296)
DNA (1614bp) protein (538aa)
Anthranilate synthase component I n=2 Tax=Bifidobacterium RepID=E3EQ59_BIFBS
trpE; anthranilate synthase
Anthranilate synthase component I {ECO:0000313|EMBL:ADO53209.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_124G1_scaffold_224_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6296..6712)
DNA (417bp) protein (139aa)
Phosphoribosyl-AMP cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_01021}; Short=PRA-CH {ECO:0000256|HAMAP-Rule:MF_01021};; EC=3.5.4.19 {ECO:0000256|HAMAP-Rule:MF_01021};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Phosphoribosyl-AMP cyclohydrolase n=4 Tax=Bifidobacterium RepID=E3EQ60_BIFBS
hisI; phosphoribosyl-AMP cyclohydrolase
L2_040_124G1_scaffold_224_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6794..7567)
DNA (774bp) protein (258aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Imidazole glycerol phosphate synthase subunit HisF n=8 Tax=Bifidobacterium RepID=E3EQ61_BIFBS
hisF; Imidazole glycerol phosphate synthase cyclase subunit
L2_040_124G1_scaffold_224_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7717..8907)
DNA (1191bp) protein (397aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Probable dual-specificity RNA methyltransferase RlmN n=2 Tax=Bifidobacterium bifidum RepID=E3EQ62_BIFBS
radical SAM family protein
L2_040_124G1_scaffold_224_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8978..9964)
DNA (987bp) protein (329aa)
cdsA; phosphatidate cytidylyltransferase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase n=9 Tax=Bifidobacterium RepID=E3EQ63_BIFBS
Phosphatidate cytidylyltransferase {ECO:0000313|EMBL:ADO53213.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_124G1_scaffold_224_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10081..10635)
DNA (555bp) protein (185aa)
Ribosome-recycling factor n=7 Tax=Bifidobacterium RepID=E3EQ64_BIFBS
rrf; ribosome recycling factor Rrf
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_040_124G1_scaffold_224_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10716..11462)
DNA (747bp) protein (249aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Uridylate kinase n=8 Tax=Bifidobacterium RepID=I3WI72_BIFBI
pyrH; uridylate kinase
L2_040_124G1_scaffold_224_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11575..12249)
DNA (675bp) protein (225aa)
Uncharacterized protein n=6 Tax=Bifidobacterium RepID=I3WI73_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI43103.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_040_124G1_scaffold_224_13
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12458..13309)
DNA (852bp) protein (284aa)
Elongation factor Ts n=7 Tax=Bifidobacterium RepID=E3EQ67_BIFBS
tsf; translation elongation factor Ts
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_040_124G1_scaffold_224_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(13386..14210)
DNA (825bp) protein (275aa)
30S ribosomal protein S2 n=8 Tax=Bifidobacterium RepID=E3EQ68_BIFBS
rpsB; 30S ribosomal protein S2
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_040_124G1_scaffold_224_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14411..14899)
DNA (489bp) protein (163aa)
def; peptide deformylase (EC:3.5.1.88)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Peptide deformylase n=6 Tax=Bifidobacterium RepID=E4NX61_BIFBP
L2_040_124G1_scaffold_224_16
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14900..16975)
DNA (2076bp) protein (692aa)
Long-chain-fatty-acid--CoA ligase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GN15_9BIFI
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:CDB22641.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
fadD4; long-chain-fatty-acid--CoA ligase
L2_040_124G1_scaffold_224_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17000..17494)
DNA (495bp) protein (165aa)
Uncharacterized protein n=4 Tax=Bifidobacterium RepID=E4VA06_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKF16608.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_040_124G1_scaffold_224_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17650..18729)
DNA (1080bp) protein (360aa)
inosine 5''''-monophosphate dehydrogenase n=1 Tax=Bifidobacterium bifidum RepID=UPI0001976DD5
GMP reductase
GMP reductase {ECO:0000313|EMBL:AFL04593.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_040_124G1_scaffold_224_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18931..20151
DNA (1221bp) protein (407aa)
icdA; isocitrate dehydrogenase IcdA (EC:1.1.1.42)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Isocitrate dehydrogenase [NADP] n=7 Tax=Bifidobacterium RepID=E3EQ73_BIFBS
L2_040_124G1_scaffold_224_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20357..21955
DNA (1599bp) protein (533aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MF42_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF15882.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L2_040_124G1_scaffold_224_21
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22102..23916)
DNA (1815bp) protein (605aa)
fadD; long-chain-fatty-acid--CoA ligase (EC:6.2.1.3)
Putative long-chain-fatty-acid--CoA ligase n=2 Tax=Bifidobacterium RepID=K2MV14_BIFBI
Putative long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:CDB22636.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_040_124G1_scaffold_224_22
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24027..25049)
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GE38_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22635.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L2_040_124G1_scaffold_224_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(25664..26707)
DNA (1044bp) protein (348aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
tRNA N6-adenosine threonylcarbamoyltransferase n=2 Tax=Bifidobacterium bifidum RepID=E3EQ77_BIFBS
gcp; O-sialoglycoprotein endopeptidase
L2_040_124G1_scaffold_224_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26704..27285)
DNA (582bp) protein (194aa)
rimI; ribosomal-protein-S18-alanine acetyltransferase (EC:2.3.1.128)
Ribosomal-protein-alanine N-acetyltransferase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2IPU8_BIFBI
Ribosomal-protein-alanine N-acetyltransferase {ECO:0000313|EMBL:EKE50800.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_040_124G1_scaffold_224_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27285..28151)
DNA (867bp) protein (289aa)
Peptidase M22, glycoprotease n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQ79_BIFBS
peptidase M22, glycoprotease
Peptidase M22, glycoprotease {ECO:0000313|EMBL:ADO53229.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_124G1_scaffold_224_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28211..28909)
DNA (699bp) protein (233aa)
Hydrolase, P-loop family n=3 Tax=Bifidobacterium RepID=E4VA16_BIFBI
Hydrolase, P-loop family {ECO:0000313|EMBL:EFR50458.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L2_040_124G1_scaffold_224_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28976..29953)
DNA (978bp) protein (326aa)
DNA polymerase III, delta subunit n=6 Tax=Bifidobacterium RepID=E3EQ81_BIFBS
holA; DNA polymerase III subunit delta
DNA polymerase III, delta subunit {ECO:0000313|EMBL:ADO53231.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_124G1_scaffold_224_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29901..31970)
DNA (2070bp) protein (690aa)
Putative hydrolase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQ82_BIFBS
hydrolase
Putative hydrolase {ECO:0000313|EMBL:ADO53232.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_124G1_scaffold_224_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31982..32809)
DNA (828bp) protein (276aa)
Competence protein ComEA n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQ83_BIFBS
comEA; competence protein ComEA
Competence protein ComEA {ECO:0000313|EMBL:ADO53233.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_124G1_scaffold_224_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(32995..35973)
DNA (2979bp) protein (993aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Leucine--tRNA ligase n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VA20_BIFBI
leuS; leucyl-tRNA synthetase
Displaying items 1-30 of 94 in total

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