ggKbase home page

L2_040_124G1_scaffold_278

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_124G1_scaffold_278_1
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..529
DNA (528bp) protein (176aa)
Histidine utilization repressor n=5 Tax=Citrobacter RepID=J1G6S7_9ENTR
Histidine utilization repressor {ECO:0000313|EMBL:KJC08313.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
histidine utilization repressor
L2_040_124G1_scaffold_278_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

666..2351
DNA (1686bp) protein (562aa)
Urocanate hydratase {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632}; Short=Urocanase {ECO:0000256|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632};; Imidazolonepropionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00577}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
urocanate hydratase (EC:4.2.1.49)
Urocanate hydratase n=3 Tax=Citrobacter RepID=J0VVF0_9ENTR
L2_040_124G1_scaffold_278_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2353..3873
DNA (1521bp) protein (507aa)
Histidine ammonia-lyase {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479}; Short=Histidase {ECO:0000256|HAMAP-Rule:MF_00229};; EC=4.3.1.3 {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479};; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
histidine ammonia-lyase (EC:4.3.1.3)
Histidine ammonia-lyase n=1 Tax=Citrobacter sp. KTE30 RepID=R8UZB8_9ENTR
L2_040_124G1_scaffold_278_4
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3969..4445)
DNA (477bp) protein (159aa)
Kinase inhibitor protein n=2 Tax=Citrobacter RepID=M3DP48_CITFR
Kinase inhibitor {ECO:0000313|EMBL:KJC10101.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
kinase inhibitor
L2_040_124G1_scaffold_278_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4503..5792)
DNA (1290bp) protein (430aa)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00834}; EC=2.6.1.62 {ECO:0000256|HAMAP-Rule:MF_00834};; 7,8-diamino-pelargonic acid aminotransferase {ECO:0000256|HAMAP-Rule:MF_00834}; 7,8-diaminononanoate synthase {ECO:0000256|HAMAP-Rule:MF_00834}; Diaminopelargonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00834}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC:2.6.1.62)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8R2A9_CITFR
L2_040_124G1_scaffold_278_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5893..6909
DNA (1017bp) protein (339aa)
Biotin synthase {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00009987}; EC=2.8.1.6 {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00250466};; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
Biotin synthase n=2 Tax=Citrobacter RepID=K8QXM7_CITFR
biotin synthase
L2_040_124G1_scaffold_278_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6906..8063
DNA (1158bp) protein (386aa)
8-amino-7-oxononanoate synthase {ECO:0000256|HAMAP-Rule:MF_01693, ECO:0000256|SAAS:SAAS00016811}; Short=AONS {ECO:0000256|HAMAP-Rule:MF_01693};; EC=2.3.1.47 {ECO:0000256|HAMAP-Rule:MF_01693, ECO:0000256|SAAS:SAAS00087543};; 7-keto-8-amino-pelargonic acid synthase {ECO:0000256|HAMAP-Rule:MF_01693}; 8-amino-7-ketopelargonate synthase {ECO:0000256|HAMAP-Rule:MF_01693}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
8-amino-7-oxononanoate synthase (EC:2.3.1.47)
8-amino-7-oxononanoate synthase n=3 Tax=Citrobacter RepID=J0VVF6_9ENTR
L2_040_124G1_scaffold_278_8
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8047..8802
DNA (756bp) protein (252aa)
Malonyl-[acyl-carrier protein] O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00835, ECO:0000256|SAAS:SAAS00055581}; Short=Malonyl-ACP O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00835};; EC=2.1.1.197 {ECO:0000256|HAMAP-Rule:MF_00835, ECO:0000256|SAAS:SAAS00055581};; Biotin synthesis protein BioC {ECO:0000256|HAMAP-Rule:MF_00835}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
Malonyl-[acyl-carrier protein] O-methyltransferase n=5 Tax=Citrobacter RepID=J0M9I7_9ENTR
biotin biosynthesis protein BioC
L2_040_124G1_scaffold_278_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8795..9493
DNA (699bp) protein (233aa)
ATP-dependent dethiobiotin synthetase BioD {ECO:0000256|HAMAP-Rule:MF_00336}; EC=6.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00336};; DTB synthetase {ECO:0000256|HAMAP-Rule:MF_00336}; Dethiobiotin synthase {ECO:0000256|HAMAP-Rule:MF_00336}; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
bioD; dethiobiotin synthetase (EC:6.3.3.3)
ATP-dependent dethiobiotin synthetase BioD n=1 Tax=Citrobacter sp. KTE30 RepID=R8UZ28_9ENTR
L2_040_124G1_scaffold_278_10
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9459..10181)
DNA (723bp) protein (241aa)
Uncharacterized protein n=6 Tax=Citrobacter RepID=J0M2R4_9ENTR
Branched-chain amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:KJC10107.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
branched-chain amino acid ABC transporter ATP-binding protein
L2_040_124G1_scaffold_278_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10951..12972
DNA (2022bp) protein (674aa)
UvrABC system protein B n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SH71_CITFR
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
excinuclease ABC subunit B
L2_040_124G1_scaffold_278_12
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13094..14002)
DNA (909bp) protein (303aa)
Putative gluconeogenesis factor n=2 Tax=Citrobacter RepID=C1M978_9ENTR
Putative gluconeogenesis factor {ECO:0000256|HAMAP-Rule:MF_00973}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
hypothetical protein
L2_040_124G1_scaffold_278_13
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14432..15454
DNA (1023bp) protein (341aa)
Cyclic pyranopterin monophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01225}; EC=4.1.99.18 {ECO:0000256|HAMAP-Rule:MF_01225};; Molybdenum cofactor biosynthesis protein A {ECO:0000256|HAMAP-Rule:MF_01225}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
Cyclic pyranopterin monophosphate synthase n=3 Tax=Citrobacter RepID=J0M9J3_9ENTR
moaA; molybdenum cofactor biosynthesis protein A
L2_040_124G1_scaffold_278_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15474..15986
DNA (513bp) protein (171aa)
Molybdenum cofactor biosynthesis protein B n=8 Tax=Citrobacter RepID=G9SH74_CITFR
molybdopterin biosynthesis protein B
Molybdenum cofactor biosynthesis protein B {ECO:0000256|PIRNR:PIRNR006443}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
L2_040_124G1_scaffold_278_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15989..16474
DNA (486bp) protein (162aa)
Cyclic pyranopterin monophosphate synthase accessory protein n=9 Tax=Citrobacter RepID=C1M981_9ENTR
Cyclic pyranopterin monophosphate synthase accessory protein {ECO:0000256|HAMAP-Rule:MF_01224}; Molybdenum cofactor biosynthesis protein C {ECO:0000256|HAMAP-Rule:MF_01224}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
moaC; molybdenum cofactor biosynthesis protein MoaC
L2_040_124G1_scaffold_278_16
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16461..16712
DNA (252bp) protein (84aa)
Molybdopterin synthase sulfur carrier subunit n=3 Tax=Citrobacter RepID=R8V050_9ENTR
Molybdopterin synthase sulfur carrier subunit {ECO:0000256|RuleBase:RU362014}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
moaD; molybdopterin synthase small subunit
L2_040_124G1_scaffold_278_17
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16714..17166
DNA (453bp) protein (151aa)
Molybdopterin synthase large subunit n=6 Tax=Citrobacter RepID=J0VVG5_9ENTR
Molybdopterin synthase catalytic subunit {ECO:0000313|EMBL:ETX72848.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
moaE; molybdopterin guanine dinucleotide biosynthesis protein MoaE
L2_040_124G1_scaffold_278_18
Citrobacter sp. KTE151, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17208..17912
DNA (705bp) protein (235aa)
Inner membrane protein n=3 Tax=Citrobacter RepID=J0M9J8_9ENTR
Inner membrane protein YbhL {ECO:0000313|EMBL:EOQ50423.1}; TaxID=1169322 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. KTE151.;"
membrane protein
L2_040_124G1_scaffold_278_19
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18013..18975)
DNA (963bp) protein (321aa)
Inner membrane protein ybhN n=1 Tax=Citrobacter sp. KTE30 RepID=R8UZ36_9ENTR
Membrane protein {ECO:0000313|EMBL:KJC10116.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
membrane protein
L2_040_124G1_scaffold_278_20
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18975..20216)
DNA (1242bp) protein (414aa)
Cardiolipin synthase B {ECO:0000256|HAMAP-Rule:MF_01917}; Short=CL synthase {ECO:0000256|HAMAP-Rule:MF_01917};; EC=2.7.8.- {ECO:0000256|HAMAP-Rule:MF_01917};; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
Cardiolipin synthase 2 n=2 Tax=Citrobacter RepID=K8R289_CITFR
cardiolipin synthase 2
L2_040_124G1_scaffold_278_21
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20213..20974)
DNA (762bp) protein (254aa)
Uncharacterized protein n=3 Tax=Citrobacter RepID=M3CG18_CITFR
Uncharacterized protein {ECO:0000313|EMBL:KJC10118.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
hypothetical protein
L2_040_124G1_scaffold_278_22
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21106..21516
DNA (411bp) protein (137aa)
Inner membrane protein YbhQ n=6 Tax=Citrobacter RepID=J0VVH0_9ENTR
Membrane protein {ECO:0000313|EMBL:KJC10119.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
membrane protein
L2_040_124G1_scaffold_278_23
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21478..22584)
DNA (1107bp) protein (369aa)
Uncharacterized protein n=3 Tax=Citrobacter RepID=K8QU46_CITFR
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
membrane protein
L2_040_124G1_scaffold_278_24
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22595..23728)
DNA (1134bp) protein (378aa)
ABC transporter membrane protein n=5 Tax=Citrobacter RepID=J1G6N3_9ENTR
Membrane protein {ECO:0000313|EMBL:KJC08290.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
membrane protein
L2_040_124G1_scaffold_278_25
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23721..25457)
DNA (1737bp) protein (579aa)
Uncharacterized protein n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3DN59_CITFR
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:KJC10121.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
multidrug ABC transporter ATP-binding protein
L2_040_124G1_scaffold_278_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25450..26445)
DNA (996bp) protein (332aa)
UPF0194 membrane protein D186_05550 n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QXK8_CITFR
UPF0194 membrane protein YbhG {ECO:0000256|HAMAP-Rule:MF_01304}; Flags: Precursor;; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
hypothetical protein
L2_040_124G1_scaffold_278_27
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26442..27119)
DNA (678bp) protein (226aa)
Transcriptional regulator n=4 Tax=Citrobacter RepID=J0VVH4_9ENTR
Transcriptional regulator {ECO:0000313|EMBL:ETX72858.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
transcriptional regulator
L2_040_124G1_scaffold_278_28
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27341..28687
DNA (1347bp) protein (449aa)
ATP-dependent RNA helicase RhlE {ECO:0000256|HAMAP-Rule:MF_00968}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00968};; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
ATP-dependent RNA helicase RhlE n=4 Tax=Citrobacter RepID=J0M9K6_9ENTR
ATP-dependent RNA helicase RhlE
L2_040_124G1_scaffold_278_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28784..30934
DNA (2151bp) protein (717aa)
Atp-dependent dna helicase n=3 Tax=Citrobacter RepID=J1G6N8_9ENTR
DEAD/DEAH box helicase family protein {ECO:0000313|EMBL:KEL77397.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
dinG; ATP-dependent DNA helicase DinG
L2_040_124G1_scaffold_278_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30964..31932
DNA (969bp) protein (323aa)
Anthranilate phosphoribosyltransferase like {ECO:0000313|EMBL:CDL38505.1}; EC=2.4.2.18 {ECO:0000313|EMBL:CDL38505.1};; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
Glycosyl transferase helical bundle domain protein n=4 Tax=Citrobacter RepID=J0M2S9_9ENTR
glycosyl transferase
Displaying items 1-30 of 41 in total

View Taxonomy