ggKbase home page

L2_040_124G1_scaffold_319

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_124G1_scaffold_319_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

544..1614
DNA (1071bp) protein (357aa)
sugar family ABC transporter ATP-binding protein (EC:3.6.3.-)
ABC-type transport system, sugar-family ATP-binding protein {ECO:0000313|EMBL:CCL23866.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCL23866.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
ABC transporter family protein n=179 Tax=Clostridium difficile RepID=T3G5G1_CLODC
L2_040_124G1_scaffold_319_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1598..2467
DNA (870bp) protein (290aa)
ABC transporter, permease protein n=194 Tax=Clostridium difficile RepID=C9XS05_CLODC
ABC transporter permease
ABC-type transport system, sugar-family permease {ECO:0000313|EMBL:CCK99860.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L2_040_124G1_scaffold_319_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2424..3371
DNA (948bp) protein (316aa)
ABC-type transport system, sugar-family permease n=1 Tax=Clostridium difficile E19 RepID=U3YMD0_CLODI
ABC-type transport system, sugar-family permease {ECO:0000313|EMBL:CCL23864.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
ABC-type transport system, sugar-familypermease
L2_040_124G1_scaffold_319_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3402..4706
DNA (1305bp) protein (435aa)
Bacterial extracellular solute-binding family protein n=182 Tax=Clostridium difficile RepID=T3G1C8_CLODC
sugar family ABC transporter substrate-binding protein
ABC transporter, solute-binding protein {ECO:0000313|EMBL:EHJ29057.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_040_124G1_scaffold_319_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4769..6031
DNA (1263bp) protein (421aa)
nucleotide pyrophosphatase (EC:3.6.1.9)
Type I phosphodiesterase / nucleotide pyrophosphatase family protein n=4 Tax=Clostridium difficile RepID=T3T2S2_CLODI
Type I phosphodiesterase / nucleotide pyrophosphatase family protein {ECO:0000313|EMBL:EQE59004.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_040_124G1_scaffold_319_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6194..8188
DNA (1995bp) protein (665aa)
UvrABC system protein B n=173 Tax=Clostridium difficile RepID=C9XS01_CLODC
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
uvrB; excinuclease ABC subunit B
L2_040_124G1_scaffold_319_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8207..11032
DNA (2826bp) protein (942aa)
UvrABC system protein A n=193 Tax=Clostridium difficile RepID=C9XS00_CLODC
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
uvrA; excinuclease ABC subunit A
L2_040_124G1_scaffold_319_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11291..13108
DNA (1818bp) protein (606aa)
UvrABC system protein C n=175 Tax=Clostridium difficile RepID=UVRC_CLOD6
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
uvrC; Excinuclease ABC subunit C
L2_040_124G1_scaffold_319_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13108..14037
DNA (930bp) protein (310aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
HPr kinase/phosphorylase n=215 Tax=Clostridium difficile RepID=C9XRZ8_CLODC
HPr kinase/phosphorylase
L2_040_124G1_scaffold_319_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14251..16047
DNA (1797bp) protein (599aa)
MutS domain V family protein n=114 Tax=Clostridium difficile RepID=T2T8X7_CLODI
Putative DNA mismatch repair ATPase MutS {ECO:0000313|EMBL:CCL23857.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
DNA mismatch repair ATPase MutS
L2_040_124G1_scaffold_319_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16187..17968)
DNA (1782bp) protein (594aa)
putative iron-only hydrogenase, catalyticsubunit HymC-like (EC:1.6.99.5)
[FeFe] hydrogenase, group A family protein {ECO:0000313|EMBL:EQG73877.1}; EC=1.12.-.- {ECO:0000313|EMBL:EQG73877.1};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
[FeFe] hydrogenase, group A family protein n=199 Tax=Clostridium difficile RepID=T2T8U1_CLODI
L2_040_124G1_scaffold_319_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17991..19877)
DNA (1887bp) protein (629aa)
4Fe-4S binding domain protein n=211 Tax=Clostridium difficile RepID=C9XRZ5_CLODC
iron-only hydrogenase, electron-transferring subunit
4Fe-4S binding domain protein {ECO:0000313|EMBL:EQE59003.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_040_124G1_scaffold_319_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19894..20391)
DNA (498bp) protein (166aa)
iron-only hydrogenase electron-transferring subunit HymA-like protein (EC:1.6.99.5)
Putative iron-only hydrogenase,electron-transferring subunit HymA-like {ECO:0000313|EMBL:CAJ70308.1}; EC=1.6.99.5 {ECO:0000313|EMBL:CAJ70308.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Respiratory-chain NADH dehydrogenase 24 Kd subunit n=210 Tax=Clostridium difficile RepID=T3G5G6_CLODC
L2_040_124G1_scaffold_319_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20709..22190)
DNA (1482bp) protein (494aa)
Cardiolipin synthetase (Cardiolipin synthase) (CL synthase) {ECO:0000313|EMBL:CAJ70307.1}; EC=2.7.8.- {ECO:0000313|EMBL:CAJ70307.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Cardiolipin synthase n=178 Tax=Clostridium difficile RepID=C9XRZ3_CLODC
cardiolipin synthase
L2_040_124G1_scaffold_319_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22508..23278
DNA (771bp) protein (257aa)
Formate/nitrite transporter n=171 Tax=Clostridium difficile RepID=G6B9A1_CLODI
putative formate/nitrite transporter
Formate/nitrite transporter family protein {ECO:0000313|EMBL:EQE59059.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_040_124G1_scaffold_319_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23512..24465
DNA (954bp) protein (318aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
UDP-N-acetylenolpyruvoylglucosamine reductase n=6 Tax=Clostridium difficile RepID=D5Q7B3_CLODI
murB; UDP-N-acetylenolpyruvoylglucosamine reductase
L2_040_124G1_scaffold_319_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24469..25182
DNA (714bp) protein (238aa)
PHP domain protein n=184 Tax=Clostridium difficile RepID=T3G4J2_CLODC
phosphoesterase
Phosphoesterase {ECO:0000313|EMBL:CKG74782.1}; Putative phosphoesterase {ECO:0000313|EMBL:CEK00110.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_040_124G1_scaffold_319_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25213..26070
DNA (858bp) protein (286aa)
UPF0042 nucleotide-binding protein CD630_34000 n=202 Tax=Clostridium difficile RepID=Y3400_CLOD6
glmZ(sRNA)-inactivating NTPase
Nucleotide-binding protein CD630_34000 {ECO:0000255|HAMAP-Rule:MF_00636}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_040_124G1_scaffold_319_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26082..27188
DNA (1107bp) protein (369aa)
Putative gluconeogenesis factor n=173 Tax=Clostridium difficile RepID=C9XRY8_CLODC
hypothetical protein
Putative gluconeogenesis factor {ECO:0000256|HAMAP-Rule:MF_00973}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_040_124G1_scaffold_319_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27257..27682
DNA (426bp) protein (142aa)
Hydrolase, NUDIX family n=205 Tax=Clostridium difficile RepID=D5Q7B7_CLODI
DNA repair protein
Putative hydrolase, NUDIX family {ECO:0000313|EMBL:CCL23847.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_040_124G1_scaffold_319_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27699..28646
DNA (948bp) protein (316aa)
Putative sporulation transcription regulator WhiA n=198 Tax=Clostridium difficile RepID=WHIA_CLOD6
hypothetical protein
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420, ECO:0000256|SAAS:SAAS00005305}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_040_124G1_scaffold_319_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28803..32372
DNA (3570bp) protein (1190aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
DNA polymerase III, alpha subunit n=20 Tax=Clostridium difficile RepID=T2Y6S1_CLODI
dnaE; DNA polymerase III DnaE
L2_040_124G1_scaffold_319_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32581..33540
DNA (960bp) protein (320aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
6-phosphofructokinase n=204 Tax=Clostridium difficile RepID=K6PF_CLOD6
6-phosphofructokinase
L2_040_124G1_scaffold_319_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33592..35352
DNA (1761bp) protein (587aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Pyruvate kinase n=60 Tax=Clostridium difficile RepID=T2UB53_CLODI
pykF; pyruvate kinase
L2_040_124G1_scaffold_319_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35527..36885
DNA (1359bp) protein (453aa)
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:EQI75550.1}; EC=2.1.1.- {ECO:0000313|EMBL:EQI75550.1};; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
23S rRNA (Uracil-5-)-methyltransferase RumA n=43 Tax=Clostridium difficile RepID=G6BTR2_CLODI
RNA methyltransferase
L2_040_124G1_scaffold_319_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37357..37995)
DNA (639bp) protein (213aa)
Uncharacterized protein n=27 Tax=Clostridium difficile RepID=T2WBE2_CLODI
conserved hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKG75706.1}; Uncharacterized protein {ECO:0000313|EMBL:CEK00028.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_040_124G1_scaffold_319_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38405..38581)
DNA (177bp) protein (59aa)
Uncharacterized protein n=190 Tax=Clostridium difficile RepID=F3Y5W2_CLOD6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFH15105.1}; TaxID=525258 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP07.;"
Displaying 27 items

View Taxonomy