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L2_040_124G1_scaffold_388

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_124G1_scaffold_388_1
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(61..648)
DNA (588bp) protein (196aa)
Formate dehydrogenase-O small subunit n=12 Tax=Enterobacteriaceae RepID=J0M1Z7_9ENTR
Sulfate ABC transporter substrate-binding protein {ECO:0000313|EMBL:AKE60880.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
sulfate ABC transporter substrate-binding protein
L2_040_124G1_scaffold_388_2
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

874..1677
DNA (804bp) protein (268aa)
Formate dehydrogenase accessory protein n=1 Tax=Salmonella enterica subsp. enterica serovar Kentucky str. ATCC 9263 RepID=V1X6Z9_SALET
Protein FdhD homolog {ECO:0000256|HAMAP-Rule:MF_00187}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
formate dehydrogenase accessory protein
L2_040_124G1_scaffold_388_3
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1806..2018
DNA (213bp) protein (71aa)
Uncharacterized protein n=2 Tax=Salmonella bongori RepID=S5NLY2_SALBN
Uncharacterized protein {ECO:0000313|EMBL:GAL51631.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
hypothetical protein
L2_040_124G1_scaffold_388_4
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2073..3818)
DNA (1746bp) protein (582aa)
Regulator n=1 Tax=Citrobacter sp. KTE32 RepID=R8V1F7_9ENTR
Frv operon regulatory protein {ECO:0000313|EMBL:AKE60883.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
frvR; frv operon regulatory protein
L2_040_124G1_scaffold_388_5
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3818..4888)
DNA (1071bp) protein (357aa)
Peptidase n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3DG29_CITFR
Peptidase {ECO:0000313|EMBL:AKE60884.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
frvX; endo-1,4-beta-glucanase FrvX
L2_040_124G1_scaffold_388_6
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4878..6323)
DNA (1446bp) protein (482aa)
putative PTS system transporter subunits IIBC (EC:2.7.1.69)
Fructose-like PTS system EIIBC component n=1 Tax=Citrobacter sp. KTE32 RepID=R8UWY6_9ENTR
PTS subunit IIBC {ECO:0000313|EMBL:AKE60885.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
L2_040_124G1_scaffold_388_7
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6334..6780)
DNA (447bp) protein (149aa)
putative fructose-like phosphotransferase system subunit EIIA (EC:2.7.1.69)
Fructose-like phosphotransferase system subunit EIIA n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3B9C1_CITFR
PTS fructose transporter subunit IIA {ECO:0000313|EMBL:AKE60886.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
L2_040_124G1_scaffold_388_8
unknown

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7033..7194
DNA (162bp) protein (54aa)

This feature has no annotations

L2_040_124G1_scaffold_388_9
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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7263..8243
DNA (981bp) protein (327aa)
Phosphofructokinase n=2 Tax=Salmonella houtenae RepID=H7EER6_SALHO
Permease {ECO:0000313|EMBL:AKE60887.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
6-phosphofructokinase
L2_040_124G1_scaffold_388_10
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8255..8569
DNA (315bp) protein (105aa)
PTS system, Lactose/Cellobiose specific IIB subunit n=2 Tax=Salmonella houtenae RepID=H7EER7_SALHO
Putative phosphotransferase system enzyme IIB component {ECO:0000313|EMBL:GAL51634.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
PTS lactose transporter subunit IIB
L2_040_124G1_scaffold_388_11
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8562..9929
DNA (1368bp) protein (456aa)
PTS system ascorbate-specific IIC component n=1 Tax=Klebsiella pneumoniae MGH 40 RepID=V3L1K9_KLEPN
PTS ascorbate transporter subunit IIC {ECO:0000313|EMBL:KEY49894.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
sugar-specific permease SgaT/UlaA
L2_040_124G1_scaffold_388_12
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9916..10758
DNA (843bp) protein (281aa)
iron ABC transporter substrate-binding protein n=1 Tax=Klebsiella oxytoca RepID=UPI0002E4DE74
Putative ketose-bisphosphate aldolase {ECO:0000313|EMBL:GAL51636.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
Tagatose 1,6-bisphosphate aldolase
L2_040_124G1_scaffold_388_13
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10818..11087
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Klebsiella oxytoca RepID=UPI0003088A8F
Uncharacterized protein {ECO:0000313|EMBL:AKE60891.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
hypothetical protein
L2_040_124G1_scaffold_388_14
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11120..11557
DNA (438bp) protein (146aa)
PTS IIA-like nitrogen-regulatory protein PtsN n=2 Tax=Klebsiella oxytoca RepID=G8WB31_KLEOK
Putative phosphotransferase system enzyme IIA component {ECO:0000313|EMBL:GAL51638.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
PTS system ascorbate-specific transporter
L2_040_124G1_scaffold_388_15
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11554..12114
DNA (561bp) protein (187aa)
Glucokinase n=2 Tax=Salmonella houtenae RepID=R0ERT0_SALHO
ATPase AAA {ECO:0000313|EMBL:AKE60893.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
glucokinase
L2_040_124G1_scaffold_388_16
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12161..12484)
DNA (324bp) protein (108aa)
Branched-chain amino acid transport protein n=3 Tax=Salmonella houtenae RepID=H7EES3_SALHO
Branched-chain amino acid transport {ECO:0000313|EMBL:AKE60894.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
hypothetical protein
L2_040_124G1_scaffold_388_17
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12484..13143)
DNA (660bp) protein (220aa)
Putative uncharacterized protein n=1 Tax=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) RepID=A9MI72_SALAR
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:AKE60895.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
hypothetical protein
L2_040_124G1_scaffold_388_18
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13242..13850
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=A8AL35_CITK8
Putative Xre family transcriptional regulator {ECO:0000313|EMBL:GAL51642.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
hypothetical protein
L2_040_124G1_scaffold_388_19
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14129..15520
DNA (1392bp) protein (464aa)
Glycoporin RafY n=20 Tax=Escherichia coli RepID=B3HX91_ECOLX
Porin {ECO:0000313|EMBL:AKE60896.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
hypothetical protein
L2_040_124G1_scaffold_388_20
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15563..15877)
DNA (315bp) protein (105aa)
L-rhamnose mutarotase n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=RHAM_CITK8
L-rhamnose mutarotase {ECO:0000313|EMBL:AKE60897.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
hypothetical protein
L2_040_124G1_scaffold_388_21
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15874..17022)
DNA (1149bp) protein (383aa)
Lactaldehyde reductase n=9 Tax=Salmonella choleraesuis RepID=B5MN01_SALET
Lactaldehyde reductase {ECO:0000313|EMBL:KDF10870.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
alcohol dehydrogenase
L2_040_124G1_scaffold_388_22
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17083..18087)
DNA (1005bp) protein (335aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=D2ZLZ9_9ENTR
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:AKE60899.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
branched-chain amino acid ABC transporter permease
L2_040_124G1_scaffold_388_23
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18084..19088)
DNA (1005bp) protein (335aa)
Rhamnose ABC transporter membrane protein n=1 Tax=Enterobacter sp. (strain 638) RepID=A4WG97_ENT38
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:AKE60900.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
inner-membrane translocator
L2_040_124G1_scaffold_388_24
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19088..20593)
DNA (1506bp) protein (502aa)
D-ribose transporter ATP binding protein n=1 Tax=Enterobacter cloacae RepID=UPI0002D51A65
Uncharacterized protein {ECO:0000313|EMBL:AKE60901.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
hypothetical protein
L2_040_124G1_scaffold_388_25
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20713..21699)
DNA (987bp) protein (329aa)
Rhamnose ABC transporter, rhamnose-binding protein n=3 Tax=Klebsiella oxytoca RepID=H3LW40_KLEOX
ABC transporter substrate-binding protein {ECO:0000313|EMBL:AKE60902.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
rhamnose ABC transporter periplasmic rhamnose-binding protein
L2_040_124G1_scaffold_388_26
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21799..22626)
DNA (828bp) protein (276aa)
Rhamnulose-1-phosphate aldolase {ECO:0000313|EMBL:AKE60903.1}; EC=4.1.2.19 {ECO:0000313|EMBL:AKE60903.1};; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
Rhamnulose-1-phosphate aldolase n=2 Tax=Citrobacter RepID=M3C8C3_CITFR
Rhamnulose-1-phosphate aldolase
L2_040_124G1_scaffold_388_27
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22737..23996)
DNA (1260bp) protein (420aa)
L-rhamnose isomerase {ECO:0000256|HAMAP-Rule:MF_00541}; EC=5.3.1.14 {ECO:0000256|HAMAP-Rule:MF_00541};; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
L-rhamnose isomerase n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=RHAA_CITK8
L-rhamnose isomerase
L2_040_124G1_scaffold_388_28
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23993..25462)
DNA (1470bp) protein (490aa)
Rhamnulokinase {ECO:0000256|HAMAP-Rule:MF_01535}; Short=RhaB {ECO:0000256|HAMAP-Rule:MF_01535};; EC=2.7.1.5 {ECO:0000256|HAMAP-Rule:MF_01535};; ATP:L-rhamnulose phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01535}; L-rhamnulose 1-kinase {ECO:0000256|HAMAP-Rule:MF_01535}; Rhamnulose kinase {ECO:0000256|HAMAP-Rule:MF_01535}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
rhaB; rhamnulokinase (EC:2.7.1.5)
Rhamnulokinase n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TU85_CITRI
L2_040_124G1_scaffold_388_29
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25763..26599
DNA (837bp) protein (279aa)
HTH-type transcriptional activator RhaS n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=RHAS_CITK8
HTH-type transcriptional activator RhaS {ECO:0000256|HAMAP-Rule:MF_01534, ECO:0000256|SAAS:SAAS00011458}; L-rhamnose operon regulatory protein RhaS {ECO:0000256|HAMAP-Rule:MF_01534}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
transcriptional activator RhaS
L2_040_124G1_scaffold_388_30
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26754..27602
DNA (849bp) protein (283aa)
HTH-type transcriptional activator RhaR n=1 Tax=Shigella flexneri 1235-66 RepID=I6HF10_SHIFL
HTH-type transcriptional activator RhaR {ECO:0000256|HAMAP-Rule:MF_01533}; L-rhamnose operon transcriptional activator RhaR {ECO:0000256|HAMAP-Rule:MF_01533}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
transcriptional activator RhaR
Displaying items 1-30 of 36 in total

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