ggKbase home page

L2_040_365G1_scaffold_257

Search features with annotation key words

Displaying items 1-30 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_365G1_scaffold_257_1
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

2..142
DNA (141bp) protein (47aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VQC4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ENY88737.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
L2_040_365G1_scaffold_257_2
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(372..1028)
DNA (657bp) protein (219aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LUQ1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFR37484.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
hypothetical protein
L2_040_365G1_scaffold_257_3
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(1035..2351)
DNA (1317bp) protein (439aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
M18 family aminopeptidase n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VQC6_9FIRM
aminopeptidase
L2_040_365G1_scaffold_257_4
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(2636..4060)
DNA (1425bp) protein (475aa)
Amino acid permease n=5 Tax=Firmicutes RepID=E4LUP9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHO25492.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
Amino acid transporters
L2_040_365G1_scaffold_257_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4276..4890
DNA (615bp) protein (205aa)
Sua5/YciO/YrdC/YwlC family protein n=5 Tax=Firmicutes RepID=E4LUP8_9CLOT
tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family {ECO:0000313|EMBL:EQJ56501.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Sua5/YciO/YrdC/YwlC family protein
L2_040_365G1_scaffold_257_6
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

5074..6261
DNA (1188bp) protein (396aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LUP7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHO25494.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
SARP family transcriptional regulator
L2_040_365G1_scaffold_257_7
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

6336..7553
DNA (1218bp) protein (406aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=E4LUP6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC86307.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
hypothetical protein
L2_040_365G1_scaffold_257_8
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

7560..7976
DNA (417bp) protein (139aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LUP5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC86306.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
L2_040_365G1_scaffold_257_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8123..8782
DNA (660bp) protein (220aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=T4NML6_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQJ56497.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L2_040_365G1_scaffold_257_10
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

8806..9513
DNA (708bp) protein (236aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LUP3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC86304.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
hypothetical protein
L2_040_365G1_scaffold_257_11
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

9554..10345
DNA (792bp) protein (264aa)
LPXTG-motif cell wall anchor domain protein n=4 Tax=Firmicutes RepID=E4LUP2_9CLOT
LPXTG-domain-containing protein cell wall anchor domain {ECO:0000313|EMBL:CDC86303.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
L2_040_365G1_scaffold_257_12
unknown

Not on your lists

10393..10497
DNA (105bp) protein (35aa)

This feature has no annotations

L2_040_365G1_scaffold_257_13
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

10673..11035
DNA (363bp) protein (121aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=E4LUP1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHO25500.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
fibro-slime domain protein
L2_040_365G1_scaffold_257_14
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11037..11642
DNA (606bp) protein (202aa)
SipW-cognate class signal peptide n=1 Tax=Erysipelotrichaceae bacterium 21_3 RepID=H1AYU4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFR37480.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
hypothetical protein
L2_040_365G1_scaffold_257_15
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

11871..12515
DNA (645bp) protein (215aa)
SipW-cognate class signal peptide domain protein n=5 Tax=Firmicutes RepID=T4NML1_CLODI
SipW-cognate class signal peptide {ECO:0000313|EMBL:CDC86300.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
L2_040_365G1_scaffold_257_16
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

12601..12780
DNA (180bp) protein (60aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LUN8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC86299.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
hypothetical protein
L2_040_365G1_scaffold_257_17
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

12773..13276
DNA (504bp) protein (168aa)
Signal peptidase I n=4 Tax=Firmicutes RepID=E4LUN7_9CLOT
Signal peptidase I {ECO:0000313|EMBL:EHO25504.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
signal peptidase I
L2_040_365G1_scaffold_257_18
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13815..14255
DNA (441bp) protein (147aa)
Ribose-5-phosphate isomerase B {ECO:0000313|EMBL:EFR37485.1}; EC=5.3.1.6 {ECO:0000313|EMBL:EFR37485.1};; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
ribose-5-phosphate isomerase (EC:5.3.1.6)
Ribose-5-phosphate isomerase B n=5 Tax=Firmicutes RepID=E4LUN6_9CLOT
L2_040_365G1_scaffold_257_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14275..14586
DNA (312bp) protein (104aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=T4NGL3_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQJ56488.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L2_040_365G1_scaffold_257_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14598..15326
DNA (729bp) protein (243aa)
Phage protein Gp37/Gp68 n=5 Tax=Firmicutes RepID=E4LUN4_9CLOT
Phage Gp37/Gp68 family protein {ECO:0000313|EMBL:EQJ56487.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L2_040_365G1_scaffold_257_21
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

15343..15717
DNA (375bp) protein (125aa)
Uncharacterized protein n=7 Tax=Firmicutes RepID=E4LUN3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY88755.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
hypothetical protein
L2_040_365G1_scaffold_257_22
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

15766..16995
DNA (1230bp) protein (410aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
Serine hydroxymethyltransferase n=4 Tax=Firmicutes RepID=H1AYV2_9FIRM
serine hydroxymethyltransferase
L2_040_365G1_scaffold_257_23
unknown

Not on your lists

17019..17228
DNA (210bp) protein (70aa)

This feature has no annotations

L2_040_365G1_scaffold_257_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17410..18087)
DNA (678bp) protein (226aa)
LysR substrate binding domain protein n=5 Tax=Firmicutes RepID=E4LUN1_9CLOT
LysR substrate binding domain protein {ECO:0000313|EMBL:EQJ56484.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
transcriptional regulator
L2_040_365G1_scaffold_257_25
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

18404..19651
DNA (1248bp) protein (416aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=H1BC70_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO25511.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
transporter
L2_040_365G1_scaffold_257_26
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(19801..21744)
DNA (1944bp) protein (648aa)
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 n=3 Tax=Firmicutes RepID=E4LUM9_9CLOT
PTS sugar transporter subunit IIA {ECO:0000313|EMBL:KGJ54538.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
Transcriptional antiterminator
L2_040_365G1_scaffold_257_27
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

22018..22461
DNA (444bp) protein (148aa)
Heat-responsive suppressor HrsA n=5 Tax=Firmicutes RepID=E4LUM8_9CLOT
PTS system fructose subfamily IIA component {ECO:0000313|EMBL:CDC86289.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
phosphoenolpyruvate-dependent sugar PTS family porter, EIIA 2
L2_040_365G1_scaffold_257_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22475..22789
DNA (315bp) protein (105aa)
PTS system, Fru family, IIB component domain protein {ECO:0000313|EMBL:EQJ56479.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EQJ56479.1};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
PTS system, Fru family, IIB component n=5 Tax=Firmicutes RepID=H1AYV7_9FIRM
PTS system fructose-specific transporter subunit IIB
L2_040_365G1_scaffold_257_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22814..23905
DNA (1092bp) protein (364aa)
Phosphotransferase system, EIIC n=5 Tax=Firmicutes RepID=E4LUM6_9CLOT
PTS system, Fru family, IIC component domain protein {ECO:0000313|EMBL:EQJ56478.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
PTS system fructose subfamily transporter subunit IIC
L2_040_365G1_scaffold_257_30
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

23911..24366
DNA (456bp) protein (152aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=H1AYV9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC86286.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
Displaying items 1-30 of 66 in total

View Taxonomy