ggKbase home page

L2_040_365G1_scaffold_285

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_365G1_scaffold_285_1
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

341..1807
DNA (1467bp) protein (489aa)
Aspartate/tyrosine/aromatic aminotransferase (EC:2.6.1.-)
Aminotransferase class I and II n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VJB8_9FIRM
Aminotransferase class I and II {ECO:0000313|EMBL:EFV17044.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
L2_040_365G1_scaffold_285_2
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(1889..2176)
DNA (288bp) protein (96aa)
Helix-turn-helix n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6R0G3_9FIRM
Helix-turn-helix {ECO:0000313|EMBL:CDC42338.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
Helix-turn-helix.
L2_040_365G1_scaffold_285_3
Lachnospiraceae bacterium 28-4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2195..2533)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9J7M5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS30200.1}; TaxID=397287 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 28-4.;"
Phage derived protein Gp49-like (DUF891).
L2_040_365G1_scaffold_285_4
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2642..3571)
DNA (930bp) protein (310aa)
Predicted permeases n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5Z938_9FIRM
Predicted permeases
Predicted permeases {ECO:0000313|EMBL:CDA33279.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L2_040_365G1_scaffold_285_5
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3758..5110
DNA (1353bp) protein (451aa)
Putative efflux protein MATE family n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5Z2Q9_9FIRM
Putative efflux protein MATE family {ECO:0000313|EMBL:CDA33280.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
putative efflux protein, MATE family
L2_040_365G1_scaffold_285_6
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5182..6621)
DNA (1440bp) protein (480aa)
Divergent AAA domain protein n=2 Tax=Oscillibacter RepID=U2QTI4_9FIRM
Divergent AAA domain protein {ECO:0000313|EMBL:ERK61263.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
putative transcriptional regulator
L2_040_365G1_scaffold_285_7
unknown

Not on your lists

comp(6829..8268)
DNA (1440bp) protein (480aa)
Amino acid carrier protein n=2 Tax=Clostridiales RepID=D4MVF8_9FIRM
amino acid carrier protein
Amino acid carrier protein {ECO:0000313|EMBL:CBL39374.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L2_040_365G1_scaffold_285_8
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8380..9180)
DNA (801bp) protein (267aa)
ABC 3 transport family protein n=2 Tax=Lachnospiraceae RepID=L1QAA7_9FIRM
ABC 3 transport family protein {ECO:0000313|EMBL:EKY24889.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
ABC-type Mn2+/Zn2+ transport systems, permease components
L2_040_365G1_scaffold_285_9
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9177..9851)
DNA (675bp) protein (225aa)
ABC-type Mn/Zn transport systems, ATPase component (EC:3.6.3.-)
ABC-type Mn/Zn transport systems, ATPase component n=4 Tax=Clostridiales RepID=D4MVF6_9FIRM
ABC-type Mn/Zn transport systems ATPase component {ECO:0000313|EMBL:CDA33283.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L2_040_365G1_scaffold_285_10
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9848..10651)
DNA (804bp) protein (268aa)
Periplasmic solute binding protein family n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VJC7_9FIRM
Periplasmic solute binding protein family {ECO:0000313|EMBL:EFV17053.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
ABC-type metal ion transport system, periplasmic component/surface adhesin
L2_040_365G1_scaffold_285_11
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10644..10916)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P496_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDS20725.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
L2_040_365G1_scaffold_285_12
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10855..11484)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P495_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDS20724.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
PAP2 superfamily.
L2_040_365G1_scaffold_285_13
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11615..12112)
DNA (498bp) protein (166aa)
Heptaprenyl diphosphate synthase component I n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VJC9_9FIRM
Heptaprenyl diphosphate synthase component I {ECO:0000313|EMBL:EFV17055.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
Predicted membrane protein
L2_040_365G1_scaffold_285_14
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12153..12521)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5ZW88_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA33287.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
hypothetical protein
L2_040_365G1_scaffold_285_15
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12524..13291)
DNA (768bp) protein (256aa)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01968}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01968};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01968}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
NAD-dependent protein deacetylases, SIR2 family (EC:3.5.1.-)
NAD-dependent protein deacetylase n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1QB99_9FIRM
L2_040_365G1_scaffold_285_16
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13386..14951)
DNA (1566bp) protein (522aa)
Carbohydrate kinase, FGGY family protein n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1QAD2_9FIRM
Carbohydrate kinase, FGGY family protein {ECO:0000313|EMBL:EKY24881.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
Sugar (pentulose and hexulose) kinases
L2_040_365G1_scaffold_285_17
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14983..15450)
DNA (468bp) protein (156aa)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.-)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
6,7-dimethyl-8-ribityllumazine synthase n=5 Tax=Clostridiales RepID=D4MVF0_9FIRM
L2_040_365G1_scaffold_285_18
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15532..16131)
DNA (600bp) protein (200aa)
GTP cyclohydrolase-2 {ECO:0000256|HAMAP-Rule:MF_00179}; EC=3.5.4.25 {ECO:0000256|HAMAP-Rule:MF_00179};; GTP cyclohydrolase II {ECO:0000256|HAMAP-Rule:MF_00179}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
GTP cyclohydrolase-2 n=5 Tax=Clostridiales RepID=D4MVE9_9FIRM
GTP cyclohydrolase II
L2_040_365G1_scaffold_285_19
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16158..16817)
DNA (660bp) protein (220aa)
riboflavin synthase, alpha subunit (EC:2.5.1.9)
Riboflavin synthase, alpha subunit n=3 Tax=Clostridiales RepID=D4MVE8_9FIRM
Riboflavin synthase {ECO:0000313|EMBL:EFV17061.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
L2_040_365G1_scaffold_285_20
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16799..17884)
DNA (1086bp) protein (362aa)
Riboflavin biosynthesis protein RibD n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1QB97_9FIRM
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
riboflavin biosynthesis protein
L2_040_365G1_scaffold_285_21
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18294..18857)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5Z950_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA33294.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L2_040_365G1_scaffold_285_22
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19666..20667)
DNA (1002bp) protein (334aa)
Hydrolase NUDIX family n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5ZGA8_9FIRM
Hydrolase NUDIX family {ECO:0000313|EMBL:CDA33251.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
Isopentenyldiphosphate isomerase
L2_040_365G1_scaffold_285_23
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20792..21619
DNA (828bp) protein (276aa)
Haloacid dehalogenase-like hydrolase n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5ZW53_9FIRM
Haloacid dehalogenase-like hydrolase {ECO:0000313|EMBL:CDA33252.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
HAD-superfamily hydrolase, subfamily IIB
L2_040_365G1_scaffold_285_24
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21825..23186)
DNA (1362bp) protein (454aa)
Citrate synthase (EC:2.3.3.5 2.3.3.1)
Citrate synthase n=5 Tax=Clostridiales RepID=D4MVE4_9FIRM
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L2_040_365G1_scaffold_285_25
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23343..23765
DNA (423bp) protein (141aa)
MarR family protein n=4 Tax=Clostridiales RepID=R5Z917_9FIRM
MarR family protein {ECO:0000313|EMBL:CDA33254.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
MarR family transcriptional regulator
L2_040_365G1_scaffold_285_26
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23787..24323
DNA (537bp) protein (179aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=L1PZC9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EKY21001.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
putative metal-dependent phosphoesterase, PHP family
L2_040_365G1_scaffold_285_27
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24431..25825)
DNA (1395bp) protein (465aa)
Pyridine nucleotide-disulfide oxidoreductase n=3 Tax=Lachnospiraceae RepID=L1Q036_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EKY21002.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
Uncharacterized FAD-dependent dehydrogenases
L2_040_365G1_scaffold_285_28
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25828..26340)
DNA (513bp) protein (171aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=B0P477_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA33257.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L2_040_365G1_scaffold_285_29
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26489..27964
DNA (1476bp) protein (492aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5Z0K5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA33258.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
Putative RNA methylase family UPF0020.
L2_040_365G1_scaffold_285_30
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28035..28976)
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5Z921_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA33259.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
Prolyl oligopeptidase family.
Displaying items 1-30 of 48 in total

View Taxonomy