ggKbase home page

L2_040_365G1_scaffold_305

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_365G1_scaffold_305_1
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

756..1004
DNA (249bp) protein (83aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=R5HPN8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30064.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
iron-only hydrogenase system regulator
L2_040_365G1_scaffold_305_2
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1008..2069
DNA (1062bp) protein (354aa)
HydE n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VI50_CLOSH
radical SAM domain-containing protein
Radical SAM domain-containing protein {ECO:0000313|EMBL:AGC67710.1}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
L2_040_365G1_scaffold_305_3
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2125..3549
DNA (1425bp) protein (475aa)
Biotin and thiamin synthesis associated n=1 Tax=Clostridium sp. CAG:43 RepID=R7B000_9CLOT
Biotin and thiamin synthesis associated {ECO:0000313|EMBL:CDD54602.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
iron-only hydrogenase maturation protein HydG
L2_040_365G1_scaffold_305_4
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3690..4898
DNA (1209bp) protein (403aa)
Small GTP-binding protein n=4 Tax=Clostridium RepID=E7GNP7_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05632.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
iron-only hydrogenase maturation protein HydF
L2_040_365G1_scaffold_305_5
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4946..5860)
DNA (915bp) protein (305aa)
Putative membrane protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ENA1_9FIRM
Putative membrane protein {ECO:0000313|EMBL:EEQ59613.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
Predicted permease, DMT superfamily
L2_040_365G1_scaffold_305_6
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6264..6743)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IS78_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY39556.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L2_040_365G1_scaffold_305_7
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6965..7687)
DNA (723bp) protein (241aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
Cell wall hydrolase/autolysin n=1 Tax=Clostridium sp. CAG:7 RepID=R5IBY4_9CLOT
Cell wall hydrolase/autolysin {ECO:0000313|EMBL:CCY39555.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
L2_040_365G1_scaffold_305_8
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7808..9493)
DNA (1686bp) protein (562aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HMK9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHE97285.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
glycoside hydrolase
L2_040_365G1_scaffold_305_9
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9732..9986)
DNA (255bp) protein (85aa)
Uncharacterized protein n=7 Tax=Clostridium RepID=A8RPZ3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP17113.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
hypothetical protein
L2_040_365G1_scaffold_305_10
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10074..10664)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IS74_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY39551.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L2_040_365G1_scaffold_305_11
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10655..12094)
DNA (1440bp) protein (480aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IBY0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY39550.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
serine/threonine protein kinase
L2_040_365G1_scaffold_305_12
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12314..13054
DNA (741bp) protein (247aa)
Genetic competence negative regulator n=4 Tax=Clostridium RepID=N9YQG0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX98535.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
negative regulator of genetic competence
L2_040_365G1_scaffold_305_13
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13802..14002)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IS70_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY39546.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L2_040_365G1_scaffold_305_14
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14379..16472
DNA (2094bp) protein (698aa)
Formate C-acetyltransferase {ECO:0000313|EMBL:EEQ58883.1}; EC=2.3.1.54 {ECO:0000313|EMBL:EEQ58883.1};; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
formate acetyltransferase (EC:2.3.1.54)
Formate C-acetyltransferase n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EF95_9FIRM
L2_040_365G1_scaffold_305_15
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16612..16857
DNA (246bp) protein (82aa)
Uncharacterized protein n=18 Tax=Clostridium RepID=A8RQ03_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF26291.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
pflB; pyruvate formate-lyase (C-terminus)
L2_040_365G1_scaffold_305_16
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16971..17723
DNA (753bp) protein (251aa)
Pyruvate formate-lyase-activating enzyme {ECO:0000256|RuleBase:RU362053}; EC=1.97.1.4 {ECO:0000256|RuleBase:RU362053};; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
pyruvate formate-lyase activating enzyme (EC:1.97.1.4)
Pyruvate formate-lyase 1-activating enzyme n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CSX1_9CLOT
L2_040_365G1_scaffold_305_17
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17832..18698)
DNA (867bp) protein (289aa)
Uncharacterized protein n=2 Tax=Coprococcus RepID=S2Y707_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD60268.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
xylose isomerase
L2_040_365G1_scaffold_305_18
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18714..19715)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=E9RSK9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC75980.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
lipopolysaccharide biosynthesis protein
L2_040_365G1_scaffold_305_19
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19793..20986)
DNA (1194bp) protein (398aa)
Uncharacterized protein n=4 Tax=Lachnospiraceae RepID=E9RSK8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD60266.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
oxidoreductase
L2_040_365G1_scaffold_305_20
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21023..21919)
DNA (897bp) protein (299aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3AIS1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG88149.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
sugar phosphate isomerase
L2_040_365G1_scaffold_305_21
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22102..23331)
DNA (1230bp) protein (410aa)
Transcriptional regulator, AraC family n=1 Tax=Clostridium hathewayi DSM 13479 RepID=D3AH00_9CLOT
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EFC98916.1}; TaxID=566550 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi DSM 13479.;"
two-component system, response regulator YesN
L2_040_365G1_scaffold_305_22
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23530..23697
DNA (168bp) protein (56aa)
Ferredoxin n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HMJ7_9CLOT
Ferredoxin {ECO:0000313|EMBL:EHE97273.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)
L2_040_365G1_scaffold_305_23
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23874..24611
DNA (738bp) protein (246aa)
Peptidase C26 n=1 Tax=Clostridium sp. CAG:7 RepID=R5IGX8_9CLOT
Peptidase C26 {ECO:0000313|EMBL:CCY39544.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
peptidase C26
L2_040_365G1_scaffold_305_24
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24595..25395)
DNA (801bp) protein (267aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9XGU2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ19369.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
hypothetical protein
L2_040_365G1_scaffold_305_25
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25392..25958)
DNA (567bp) protein (189aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Clostridium bolteae 90B8 RepID=N9Z9X0_9CLOT
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:ENZ36590.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
RNA polymerase, sigma subunit, ECF family
L2_040_365G1_scaffold_305_26
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26111..26806)
DNA (696bp) protein (232aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123176};; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
phosphoribosylanthranilate isomerase (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase n=10 Tax=Clostridium RepID=G5HY70_9CLOT
L2_040_365G1_scaffold_305_27
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26793..27839)
DNA (1047bp) protein (349aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
Anthranilate phosphoribosyltransferase n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EFA7_9FIRM
anthranilate phosphoribosyltransferase
L2_040_365G1_scaffold_305_28
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27864..28451)
DNA (588bp) protein (196aa)
Aminodeoxychorismate/anthranilate synthase component 2 {ECO:0000313|EMBL:KJJ77864.1}; EC=2.6.1.85 {ECO:0000313|EMBL:KJJ77864.1};; EC=4.1.3.27 {ECO:0000313|EMBL:KJJ77864.1};; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HMI7_9CLOT
glutamine amidotransferase of anthranilate synthase
L2_040_365G1_scaffold_305_29
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28448..29956)
DNA (1509bp) protein (503aa)
Anthranilate synthase component 1 {ECO:0000313|EMBL:KJJ77863.1}; EC=4.1.3.27 {ECO:0000313|EMBL:KJJ77863.1};; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
anthranilate synthase (EC:4.1.3.27)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HMI6_9CLOT
L2_040_365G1_scaffold_305_30
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30413..31057)
DNA (645bp) protein (215aa)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
thiamine-phosphate diphosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase n=1 Tax=Clostridium sp. CAG:7 RepID=R5J2F7_9CLOT
Displaying items 1-30 of 45 in total

View Taxonomy