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L2_040_365G1_scaffold_349

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_365G1_scaffold_349_1
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..1153)
DNA (1152bp) protein (384aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
Superfamily I DNA and RNA helicases (EC:3.6.1.-)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HS37_9CLOT
L2_040_365G1_scaffold_349_2
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1155..2603)
DNA (1449bp) protein (483aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IUJ8_9CLOT
L2_040_365G1_scaffold_349_3
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2734..4827)
DNA (2094bp) protein (698aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQR8_9FIRM
L2_040_365G1_scaffold_349_4
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5105..5371)
DNA (267bp) protein (89aa)
30S ribosomal protein S15 n=19 Tax=Clostridiales RepID=A8RZ95_9CLOT
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
30S ribosomal protein S15
L2_040_365G1_scaffold_349_5
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5537..6481)
DNA (945bp) protein (315aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
Riboflavin biosynthesis protein RibF n=4 Tax=Clostridium RepID=N9XK50_9CLOT
riboflavin biosynthesis protein RibF
L2_040_365G1_scaffold_349_6
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6478..7434)
DNA (957bp) protein (319aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
tRNA pseudouridine synthase B n=1 Tax=Clostridium sp. CAG:7 PF8_9CLOT">RepID=R5IPF8_9CLOT
tRNA pseudouridine synthase B
L2_040_365G1_scaffold_349_7
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7435..8403)
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae CAG:59 RepID=R5EZ54_9CLOT
Phosphoesterase RecJ protein {ECO:0000313|EMBL:ENZ15588.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
Exopolyphosphatase-related proteins
L2_040_365G1_scaffold_349_8
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8404..8748)
DNA (345bp) protein (115aa)
Ribosome-binding factor A n=1 Tax=Clostridium sp. CAG:7 RepID=R5IP80_9CLOT
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
ribosome-binding factor A
L2_040_365G1_scaffold_349_9
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8822..11596)
DNA (2775bp) protein (925aa)
Translation initiation factor IF-2 n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RZ89_9CLOT
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
translation initiation factor IF-2
L2_040_365G1_scaffold_349_10
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11583..11918)
DNA (336bp) protein (112aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HS48_9CLOT
Putative ribosomal protein YlxQ {ECO:0000313|EMBL:KJJ73727.1}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
ribosomal protein L7Ae/L30e/S12e/Gadd45
L2_040_365G1_scaffold_349_11
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11905..12180)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IN14_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41699.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L2_040_365G1_scaffold_349_12
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12212..13399)
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IY98_9CLOT
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
transcription termination factor NusA
L2_040_365G1_scaffold_349_13
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13423..13890)
DNA (468bp) protein (156aa)
Ribosome maturation factor RimP n=1 Tax=Clostridium sp. CAG:7 RepID=R5IHS7_9CLOT
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L2_040_365G1_scaffold_349_14
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14058..15197)
DNA (1140bp) protein (380aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
N-acetylglucosamine-6-phosphate deacetylase (EC:3.5.1.25)
N-acetylglucosamine-6-phosphate deacetylase n=7 Tax=Clostridium RepID=A8RZ82_9CLOT
L2_040_365G1_scaffold_349_15
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15418..15693
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IY93_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41707.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L2_040_365G1_scaffold_349_16
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15822..21320)
DNA (5499bp) protein (1833aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9X6N1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY91568.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
family 6 carbohydrate binding protein
L2_040_365G1_scaffold_349_17
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21305..21943)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9X6N1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY91568.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
L2_040_365G1_scaffold_349_18
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22202..23479)
DNA (1278bp) protein (426aa)
UPF0597 protein BN757_00167 n=1 Tax=Clostridium sp. CAG:7 RepID=R5IHT1_9CLOT
UPF0597 protein BN757_00167 {ECO:0000256|HAMAP-Rule:MF_01845}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L2_040_365G1_scaffold_349_19
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23644..24537
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5II04_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41710.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
LysR family transcriptional regulator
L2_040_365G1_scaffold_349_20
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24556..25050)
DNA (495bp) protein (165aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01032};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
3-isopropylmalate dehydratase, small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit n=8 Tax=Clostridium RepID=N9UY56_9CLOT
L2_040_365G1_scaffold_349_21
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25078..26340)
DNA (1263bp) protein (421aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
3-isopropylmalate dehydratase, large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Clostridium clostridioforme 2_1_49FAA RepID=G5I7F5_9CLOT
L2_040_365G1_scaffold_349_22
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26495..27376
DNA (882bp) protein (294aa)
LysR family transcriptional regulator n=8 Tax=Clostridium RepID=N9WI79_9CLOT
LysR family transcriptional regulator {ECO:0000313|EMBL:ENZ08764.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
LysR family transcriptional regulator
L2_040_365G1_scaffold_349_23
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27424..28302)
DNA (879bp) protein (293aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IBQ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI61120.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
Protein of unknown function (DUF3298).
L2_040_365G1_scaffold_349_24
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28299..28787)
DNA (489bp) protein (163aa)
RNA polymerase sigma factor n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HDR1_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
RNA polymerase, sigma subunit, SigV
L2_040_365G1_scaffold_349_25
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28961..29980)
DNA (1020bp) protein (340aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Ketol-acid reductoisomerase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IHT6_9CLOT
ketol-acid reductoisomerase
L2_040_365G1_scaffold_349_26
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30083..30589)
DNA (507bp) protein (169aa)
Acetolactate synthase, small subunit {ECO:0000313|EMBL:EEG54019.1}; EC=2.2.1.6 {ECO:0000313|EMBL:EEG54019.1};; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
Acetolactate synthase, small subunit n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D3T8_9CLOT
acetolactate synthase small subunit
L2_040_365G1_scaffold_349_27
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30769..31440)
DNA (672bp) protein (224aa)
HAD hydrolase, family IA n=2 Tax=Clostridium RepID=N9YLV8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF23750.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
HAD-superfamily hydrolase
L2_040_365G1_scaffold_349_28
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31440..32273)
DNA (834bp) protein (278aa)
NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding (EC:3.6.1.22)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IHU0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41718.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
L2_040_365G1_scaffold_349_29
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32326..32508)
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQP4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEQ60338.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
L2_040_365G1_scaffold_349_30
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32557..33954)
DNA (1398bp) protein (466aa)
MATE efflux family protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5II14_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:CCY41720.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
putative efflux protein, MATE family
Displaying items 1-30 of 38 in total

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