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L2_040_365G1_scaffold_404

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_365G1_scaffold_404_1
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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456..1922
DNA (1467bp) protein (489aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI00037027A3
Glycosyl hydrolase family 39 {ECO:0000313|EMBL:ERI70022.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
hypothetical protein
L2_040_365G1_scaffold_404_2
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1944..3692
DNA (1749bp) protein (583aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI000304F1E3
hypothetical protein
L2_040_365G1_scaffold_404_3
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3713..5272
DNA (1560bp) protein (520aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002D5EB1C
Uncharacterized protein {ECO:0000313|EMBL:KEZ90080.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
AraC family transcriptional regulator
L2_040_365G1_scaffold_404_4
Eubacterium sp. CAG:156, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5355..6641
DNA (1287bp) protein (429aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI00031932F3
ABC transporter solute-binding protein {ECO:0000313|EMBL:CDA29086.1}; TaxID=1262880 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:156.;"
extracellular solute-binding protein
L2_040_365G1_scaffold_404_5
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6657..7544
DNA (888bp) protein (296aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002ED7E25
Carbohydrate ABC transporter membrane protein 1, CUT1 family {ECO:0000313|EMBL:EXG85133.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
binding-protein-dependent transport system inner membrane protein
L2_040_365G1_scaffold_404_6
Eubacterium ventriosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7557..8396
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI00031315A3
ABC transporter, permease protein {ECO:0000313|EMBL:EDM49961.1}; TaxID=411463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ventriosum ATCC 27560.;"
binding-protein-dependent transport system inner membrane protein
L2_040_365G1_scaffold_404_7
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8734..9963)
DNA (1230bp) protein (410aa)
Peptidase T {ECO:0000256|SAAS:SAAS00064331}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279025};; EC=3.4.11.- {ECO:0000256|SAAS:SAAS00275860};; EC=3.4.11.4 {ECO:0000256|SAAS:SAAS00064282};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
peptidase T (EC:3.4.11.4)
Peptidase T n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CNH4_9FIRM
L2_040_365G1_scaffold_404_8
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10451..11473
DNA (1023bp) protein (341aa)
membrane protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0003117F8B
HflK protein {ECO:0000313|EMBL:EES77165.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
HflK protein
L2_040_365G1_scaffold_404_9
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11560..12426
DNA (867bp) protein (289aa)
Protein HflC n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDB5_9FIRM
Protein HflC {ECO:0000256|PIRNR:PIRNR005651}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L2_040_365G1_scaffold_404_10
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12584..12937
DNA (354bp) protein (118aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JDB4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79762.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Nucleotidyltransferase domain.
L2_040_365G1_scaffold_404_11
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12928..13362
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPB9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79760.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L2_040_365G1_scaffold_404_12
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13775..14710
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDB2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77161.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L2_040_365G1_scaffold_404_13
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14889..16046
DNA (1158bp) protein (386aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDB1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77160.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Uncharacterized flavoproteins
L2_040_365G1_scaffold_404_14
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16167..16673
DNA (507bp) protein (169aa)
phosphohydrolase n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002D43F4E
Uncharacterized protein {ECO:0000313|EMBL:EES77159.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
HD domain.
L2_040_365G1_scaffold_404_15
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16991..17587
DNA (597bp) protein (199aa)
RNA polymerase sigma-70 factor n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CG85_9FIRM
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:CDD77081.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
RNA polymerase sigma factor, sigma-70 family
L2_040_365G1_scaffold_404_16
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17648..19390
DNA (1743bp) protein (581aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CGI7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77080.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L2_040_365G1_scaffold_404_17
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19600..20772
DNA (1173bp) protein (391aa)
Malic enzyme (EC:1.1.1.38)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDA6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77155.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L2_040_365G1_scaffold_404_18
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21023..21637
DNA (615bp) protein (205aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JDA5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77154.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L2_040_365G1_scaffold_404_19
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22033..23319
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDA4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77153.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L2_040_365G1_scaffold_404_20
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23476..24528
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDA3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77152.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
sugar ABC transporter permease
L2_040_365G1_scaffold_404_21
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24528..25388
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDA2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77151.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
sugar ABC transporter permease
L2_040_365G1_scaffold_404_22
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25763..27172
DNA (1410bp) protein (470aa)
Mate efflux family protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CH43_9FIRM
Mate efflux family protein {ECO:0000313|EMBL:CDD77072.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
putative efflux protein, MATE family
L2_040_365G1_scaffold_404_23
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27747..28706
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CG76_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77071.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
cation diffusion facilitator family transporter
L2_040_365G1_scaffold_404_24
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29062..31170
DNA (2109bp) protein (703aa)
Polyphosphate kinase {ECO:0000256|RuleBase:RU003800, ECO:0000256|SAAS:SAAS00008191}; EC=2.7.4.1 {ECO:0000256|RuleBase:RU003800, ECO:0000256|SAAS:SAAS00008191};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Polyphosphate kinase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JD96_9FIRM
polyphosphate kinase
L2_040_365G1_scaffold_404_25
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31605..32819)
DNA (1215bp) protein (405aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JD95_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77144.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
transposase
L2_040_365G1_scaffold_404_26
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34320..35171
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JD93_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77142.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Transcriptional antiterminator
L2_040_365G1_scaffold_404_27
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35295..37181
DNA (1887bp) protein (629aa)
PTS system, beta-glucoside-specific IIABC component n=2 Tax=Ruminococcus RepID=C6JD92_9FIRM
PTS system, beta-glucoside-specific IIABC component {ECO:0000313|EMBL:EES77141.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
PTS system, glucose subfamily, IIA component
L2_040_365G1_scaffold_404_28
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37252..38679
DNA (1428bp) protein (476aa)
6-phospho-beta-glucosidase (EC:3.2.1.21 3.2.1.86)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JD91_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77140.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L2_040_365G1_scaffold_404_29
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38861..38974
DNA (114bp) protein (38aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=T5LV76_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQM98714.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
diguanylate cyclase (GGDEF) domain
L2_040_365G1_scaffold_404_30
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39206..39466)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JD89_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77138.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Displaying 30 items

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