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L2_040_365G1_scaffold_453

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_365G1_scaffold_453_1
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(85..1521)
DNA (1437bp) protein (479aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4N5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05897.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_040_365G1_scaffold_453_2
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1977..2858)
DNA (882bp) protein (294aa)
ppiB; Putative peptidyl-prolyl cis-trans isomerase Short=PPIase; Short=Rotamase (EC:5.2.1.8)
Conserved domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TH01_9FIRM
Conserved domain protein {ECO:0000313|EMBL:CDC67156.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_040_365G1_scaffold_453_3
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2870..4285)
DNA (1416bp) protein (472aa)
cysS; Cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Cysteine--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8P2_9FIRM
L2_040_365G1_scaffold_453_4
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4311..4964)
DNA (654bp) protein (218aa)
cysE; Serine O-acetyltransferase (EC:2.3.1.30)
Serine acetyltransferase {ECO:0000256|PIRNR:PIRNR000441}; EC=2.3.1.30 {ECO:0000256|PIRNR:PIRNR000441, ECO:0000313|EMBL:CCO05894.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Serine acetyltransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T130_9FIRM
L2_040_365G1_scaffold_453_5
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5278..5856)
DNA (579bp) protein (193aa)
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:CCO05893.1}; EC=2.7.8.5 {ECO:0000313|EMBL:CCO05893.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBV3_9FIRM
L2_040_365G1_scaffold_453_6
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5873..7201)
DNA (1329bp) protein (443aa)
rimO; ribosomal protein S12 methylthiotransferase RimO (EC:2.1.1.-)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4N9_9FIRM
L2_040_365G1_scaffold_453_7
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7511..8359)
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TH04_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67161.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L2_040_365G1_scaffold_453_8
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8371..8991)
DNA (621bp) protein (207aa)
Regulatory protein RecX n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8P5_9FIRM
recX; Regulatory protein RecX
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_040_365G1_scaffold_453_9
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8995..10245)
DNA (1251bp) protein (417aa)
recA; Recombination protein RecA (EC:3.6.3.8)
Protein RecA n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T134_9FIRM
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_040_365G1_scaffold_453_10
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10360..11181)
DNA (822bp) protein (274aa)
hemK; M|ethyltransferase, HemK family (EC:2.1.1.-)
Protein-(Glutamine-N5) methyltransferase release factor-specific n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBV7_9FIRM
Protein-(Glutamine-N5) methyltransferase release factor-specific {ECO:0000313|EMBL:CDC67164.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_040_365G1_scaffold_453_11
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11175..12137)
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4P3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05887.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_040_365G1_scaffold_453_12
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12167..13672)
DNA (1506bp) protein (502aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Two-component system sensor histidine kinase (EC:2.7.3.-)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TH08_9FIRM
L2_040_365G1_scaffold_453_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13707..14411)
DNA (705bp) protein (235aa)
Two component transcriptional regulator winged helix family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8Q0_9FIRM
Two-component system transcriptional regulator
Two-component system transcriptional regulator {ECO:0000313|EMBL:CCO05885.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_040_365G1_scaffold_453_14
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14433..15767)
DNA (1335bp) protein (445aa)
Conserved domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T137_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05884.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_040_365G1_scaffold_453_15
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15893..17239)
DNA (1347bp) protein (449aa)
Citrate synthase (EC:2.3.3.1)
Citrate (Si)-synthase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBW2_9FIRM
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369, ECO:0000313|EMBL:CCO05883.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_040_365G1_scaffold_453_16
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17452..18438
DNA (987bp) protein (329aa)
SpoIID/LytB domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4P8_9FIRM
SpoIID/LytB domain protein {ECO:0000313|EMBL:CDC67170.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
spoIID; Stage II sporulation protein D
L2_040_365G1_scaffold_453_17
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18413..18742)
DNA (330bp) protein (110aa)
Cupin domain n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TH12_9FIRM
Cupin domain {ECO:0000313|EMBL:CDC67171.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L2_040_365G1_scaffold_453_18
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18866..20128)
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8Q5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67172.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L2_040_365G1_scaffold_453_19
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20367..21014)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T142_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67173.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L2_040_365G1_scaffold_453_20
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21165..21569)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBW7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67174.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L2_040_365G1_scaffold_453_21
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21762..21986
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4Q2_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05877.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_040_365G1_scaffold_453_22
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21983..23137
DNA (1155bp) protein (385aa)
Cysteine desulfurase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TH14_9FIRM
cysteine desulfurase family protein
Cysteine desulfurase {ECO:0000313|EMBL:CDC67176.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_040_365G1_scaffold_453_23
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23259..23672
DNA (414bp) protein (138aa)
Putative membrane protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8Q8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05875.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_040_365G1_scaffold_453_24
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23683..24270
DNA (588bp) protein (196aa)
putative phosphinothricin acetyltransferase (EC:2.3.1.183)
Acetyltransferase GNAT family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T145_9FIRM
Acetyltransferase GNAT family {ECO:0000313|EMBL:CDC67178.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_040_365G1_scaffold_453_25
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24323..25435
DNA (1113bp) protein (371aa)
pheA; P-protein (Prephenate dehydratase/chorismate mutase) (EC:4.2.1.51)
Prephenate dehydratase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBX2_9FIRM
Prephenate dehydratase {ECO:0000313|EMBL:CDC67179.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_040_365G1_scaffold_453_26
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25467..25940
DNA (474bp) protein (158aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4Q6_9FIRM
L2_040_365G1_scaffold_453_27
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25991..28231)
DNA (2241bp) protein (747aa)
Cell wall binding repeat-containing protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TH19_9FIRM
Cell wall binding repeat-containing protein {ECO:0000313|EMBL:CDC67181.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L2_040_365G1_scaffold_453_28
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28644..29123
DNA (480bp) protein (160aa)
Transcriptional regulator AsnC family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T724_9FIRM
Transcriptional regulator, AsnC family
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:CCO05870.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_040_365G1_scaffold_453_29
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29120..30304
DNA (1185bp) protein (395aa)
aminotransferase class I and II (EC:2.6.1.-)
Putative aspartate transaminase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCH5_9FIRM
Putative aspartate transaminase {ECO:0000313|EMBL:CDC65526.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_040_365G1_scaffold_453_30
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30288..31169
DNA (882bp) protein (294aa)
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U432_9FIRM
Displaying items 1-30 of 35 in total

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