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L2_040_365G1_scaffold_717

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_365G1_scaffold_717_1
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..274
DNA (273bp) protein (91aa)
Cupin domain n=2 Tax=Clostridiales RepID=D4MUD2_9FIRM
Cupin domain.
Uncharacterized protein {ECO:0000313|EMBL:EDS20278.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
L2_040_365G1_scaffold_717_2
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(546..1385)
DNA (840bp) protein (280aa)
Aldo/keto reductases, related to diketogulonate reductase n=2 Tax=Clostridiales RepID=D4MUD1_9FIRM
Aldo/keto reductases, related to diketogulonate reductase
Oxidoreductase, aldo/keto reductase family protein {ECO:0000313|EMBL:EDS20277.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
L2_040_365G1_scaffold_717_3
unknown

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comp(1415..1693)
DNA (279bp) protein (93aa)
Acetyltransferase (Isoleucine patch superfamily) n=3 Tax=Clostridiales RepID=D4MUD0_9FIRM
Acetyltransferase (isoleucine patch superfamily)
Acetyltransferase (Isoleucine patch superfamily) {ECO:0000313|EMBL:CBL38996.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L2_040_365G1_scaffold_717_4
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1705..2235)
DNA (531bp) protein (177aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=B0P4M2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG36489.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
hypothetical protein
L2_040_365G1_scaffold_717_5
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2217..2600)
DNA (384bp) protein (128aa)
HTH-type transcriptional regulator AdhR n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1Q358_9FIRM
HTH-type transcriptional regulator AdhR {ECO:0000313|EMBL:EKY22311.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
transcriptional regulator, MerR family
L2_040_365G1_scaffold_717_6
unknown

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comp(2617..3114)
DNA (498bp) protein (166aa)
Flavodoxins n=2 Tax=Clostridiales RepID=D4MUC7_9FIRM
Flavodoxins
Flavodoxins {ECO:0000313|EMBL:CBL38993.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L2_040_365G1_scaffold_717_7
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3277..3489)
DNA (213bp) protein (71aa)
CobQ/CobB/MinD/ParA nucleotide binding domain n=2 Tax=Clostridiales RepID=D4MUC5_9FIRM
CobQ/CobB/MinD/ParA nucleotide binding domain.
Uncharacterized protein {ECO:0000313|EMBL:EDS20270.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
L2_040_365G1_scaffold_717_8
unknown

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comp(3515..3742)
DNA (228bp) protein (76aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0P4L6_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL38990.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L2_040_365G1_scaffold_717_9
unknown

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comp(3732..3989)
DNA (258bp) protein (86aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0P4L5_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL38989.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L2_040_365G1_scaffold_717_10
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4273..6213)
DNA (1941bp) protein (647aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
lysS; lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase n=1 Tax=Clostridium sp. SS2/1 RepID=B0P4L3_9CLOT
L2_040_365G1_scaffold_717_11
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6229..6708)
DNA (480bp) protein (160aa)
Transcription elongation factor GreA n=5 Tax=Clostridiales RepID=D4MUC2_9FIRM
transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L2_040_365G1_scaffold_717_12
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6778..7776)
DNA (999bp) protein (333aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
tRNA-dihydrouridine synthase n=4 Tax=Clostridiales RepID=D4MUC1_9FIRM
tRNA-U20-dihydrouridine synthase
L2_040_365G1_scaffold_717_13
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7763..8527)
DNA (765bp) protein (255aa)
pantothenate kinase (EC:2.7.1.33)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
Type III pantothenate kinase n=5 Tax=Clostridiales RepID=D4MUC0_9FIRM
L2_040_365G1_scaffold_717_14
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8531..8863)
DNA (333bp) protein (111aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=B0P4K9_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA31247.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L2_040_365G1_scaffold_717_15
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8909..9889)
DNA (981bp) protein (327aa)
birA, biotin-[acetyl-CoA-carboxylase] ligase region (EC:6.3.4.15)
Biotin--[acetyl-CoA-carboxylase] ligase n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1QCE2_9FIRM
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
L2_040_365G1_scaffold_717_16
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9905..10858)
DNA (954bp) protein (318aa)
ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
Ornithine carbamoyltransferase n=3 Tax=Clostridiales RepID=D4MUB7_9FIRM
L2_040_365G1_scaffold_717_17
unknown

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comp(10971..11621)
DNA (651bp) protein (217aa)
Lysophospholipase L1 and related esterases (EC:3.1.1.2)
Lysophospholipase L1 and related esterases {ECO:0000313|EMBL:CBL38982.1}; EC=3.1.1.2 {ECO:0000313|EMBL:CBL38982.1};; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
Lysophospholipase L1 and related esterases n=5 Tax=Clostridiales RepID=D4MUB6_9FIRM
L2_040_365G1_scaffold_717_18
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11726..12712)
DNA (987bp) protein (329aa)
Membrane protease subunits, stomatin/prohibitin homologs n=5 Tax=Clostridiales RepID=D4MUB5_9FIRM
SPFH domain/Band 7 family protein {ECO:0000313|EMBL:EFV15319.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
Membrane protease subunits, stomatin/prohibitin homologs
L2_040_365G1_scaffold_717_19
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12714..13145)
DNA (432bp) protein (144aa)
NfeD-like protein n=2 Tax=Lachnospiraceae RepID=E5VPA7_9FIRM
NfeD-like protein {ECO:0000313|EMBL:CDA31242.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
Membrane protein implicated in regulation of membrane protease activity
L2_040_365G1_scaffold_717_20
unknown

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comp(13146..13919)
DNA (774bp) protein (258aa)
rRNA methylases n=4 Tax=Clostridiales RepID=D4MUB3_9FIRM
rRNA methylases
rRNA methylases {ECO:0000313|EMBL:CBL38979.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L2_040_365G1_scaffold_717_21
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13942..14589)
DNA (648bp) protein (216aa)
TrkA-N domain-containing protein n=2 Tax=Lachnospiraceae RepID=E5VPA9_9FIRM
TrkA-N domain-containing protein {ECO:0000313|EMBL:CDA31240.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
K+ transport systems, NAD-binding component
L2_040_365G1_scaffold_717_22
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14643..15995)
DNA (1353bp) protein (451aa)
TrkH family potassium uptake protein n=2 Tax=Lachnospiraceae RepID=E5VPB0_9FIRM
TrkH family potassium uptake protein {ECO:0000313|EMBL:CDA31239.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
Trk-type K+ transport systems, membrane components
L2_040_365G1_scaffold_717_23
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16067..17056)
DNA (990bp) protein (330aa)
6-phosphofructokinase (EC:2.7.1.11)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
6-phosphofructokinase n=5 Tax=Clostridiales RepID=D4MUB0_9FIRM
L2_040_365G1_scaffold_717_24
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17144..20599)
DNA (3456bp) protein (1152aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
DNA polymerase III catalytic subunit, DnaE type (EC:2.7.7.7)
DNA polymerase III n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5ZQL5_9FIRM
L2_040_365G1_scaffold_717_25
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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20761..22119
DNA (1359bp) protein (453aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC:6.3.2.10)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=2 Tax=Lachnospiraceae RepID=E5VPB3_9FIRM
L2_040_365G1_scaffold_717_26
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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22545..24248
DNA (1704bp) protein (568aa)
Carbon starvation protein, predicted membrane protein n=4 Tax=Clostridiales RepID=D4MUA7_9FIRM
Carbon starvation protein, predicted membrane protein
Carbon starvation protein CstA {ECO:0000313|EMBL:EFV15327.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
Displaying 26 items

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