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L2_040_365G1_scaffold_1200

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_365G1_scaffold_1200_1
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..625
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J6T4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44592.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L2_040_365G1_scaffold_1200_2
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(632..1174)
DNA (543bp) protein (181aa)
Transcriptional regulator PadR family n=1 Tax=Clostridium sp. CAG:7 RepID=R5IQX1_9CLOT
Transcriptional regulator PadR family {ECO:0000313|EMBL:CCY44593.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
PadR family transcriptional regulator
L2_040_365G1_scaffold_1200_3
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1383..2087
DNA (705bp) protein (235aa)
Integral membrane protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IW75_9CLOT
Integral membrane protein {ECO:0000313|EMBL:CCY44594.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Predicted membrane protein
L2_040_365G1_scaffold_1200_4
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2355..4301
DNA (1947bp) protein (649aa)
NADH:flavin oxidoreductases Old Yellow Enzyme family n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N9T8_9FIRM
NADH:flavin oxidoreductases Old Yellow Enzyme family {ECO:0000313|EMBL:CCY98614.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
enoate reductase
L2_040_365G1_scaffold_1200_5
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4677..6626
DNA (1950bp) protein (650aa)
Myosin-crossreactive antigen n=1 Tax=Clostridium sp. CAG:7 RepID=R5J6E6_9CLOT
Myosin-crossreactive antigen {ECO:0000313|EMBL:CCY44596.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Myosin-crossreactive antigen
L2_040_365G1_scaffold_1200_6
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6666..7307)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J6T8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44597.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L2_040_365G1_scaffold_1200_7
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7568..8521
DNA (954bp) protein (318aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IQX5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44598.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L2_040_365G1_scaffold_1200_8
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8644..9711
DNA (1068bp) protein (356aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IW80_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44599.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
DnaJ-class molecular chaperone with C-terminal Zn finger domain
L2_040_365G1_scaffold_1200_9
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9774..12776
DNA (3003bp) protein (1001aa)
Glycoside hydrolase family 3 domain protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IR74_9CLOT
Glycoside hydrolase family 3 domain protein {ECO:0000313|EMBL:CCY44600.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
glycoside hydrolase family protein
L2_040_365G1_scaffold_1200_10
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12949..14415)
DNA (1467bp) protein (489aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J6E9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44601.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Putative cell wall binding repeat.
L2_040_365G1_scaffold_1200_11
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14602..15363
DNA (762bp) protein (254aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J6U2_9CLOT
putative hydrolase
L2_040_365G1_scaffold_1200_12
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15479..16858)
DNA (1380bp) protein (460aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=2 Tax=Clostridium clostridioforme RepID=N9Z645_9CLOT
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:ENZ15989.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
diguanylate cyclase/phosphodiesterase
L2_040_365G1_scaffold_1200_13
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17057..17761
DNA (705bp) protein (235aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
uridylate kinase (EC:2.7.4.22)
Uridylate kinase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IQX7_9CLOT
L2_040_365G1_scaffold_1200_14
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17827..18378
DNA (552bp) protein (184aa)
Ribosome-recycling factor n=1 Tax=Clostridium sp. CAG:7 RepID=R5IW83_9CLOT
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
ribosome recycling factor
L2_040_365G1_scaffold_1200_15
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18641..19360
DNA (720bp) protein (240aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
undecaprenyl diphosphate synthase (EC:2.5.1.31)
Isoprenyl transferase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IR79_9CLOT
L2_040_365G1_scaffold_1200_16
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19580..20380
DNA (801bp) protein (267aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
CDP-diglyceride synthetase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase n=1 Tax=Clostridium sp. CAG:7 RepID=R5J6F3_9CLOT
L2_040_365G1_scaffold_1200_17
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20422..21588
DNA (1167bp) protein (389aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Clostridium sp. CAG:7 RepID=R5J6U6_9CLOT
L2_040_365G1_scaffold_1200_18
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21615..22667
DNA (1053bp) protein (351aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
RIP metalloprotease RseP n=1 Tax=Clostridium sp. CAG:7 RepID=R5IQY2_9CLOT
putative membrane-associated Zn-dependent protease
L2_040_365G1_scaffold_1200_19
unknown

Not on your lists

22668..22799
DNA (132bp) protein (44aa)

This feature has no annotations

L2_040_365G1_scaffold_1200_20
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22819..23892
DNA (1074bp) protein (358aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IW86_9CLOT
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
L2_040_365G1_scaffold_1200_21
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23898..28547
DNA (4650bp) protein (1550aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
DNA polymerase III polC-type n=1 Tax=Clostridium sp. CAG:7 RepID=R5IR82_9CLOT
DNA polymerase III subunit alpha
L2_040_365G1_scaffold_1200_22
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28826..30193
DNA (1368bp) protein (456aa)
Transporter n=1 Tax=Clostridium sp. CAG:7 RepID=R5J6F8_9CLOT
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Na+-dependent transporters of the SNF family
L2_040_365G1_scaffold_1200_23
unknown

Not on your lists

30357..30587
DNA (231bp) protein (77aa)

This feature has no annotations

L2_040_365G1_scaffold_1200_24
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31033..31725
DNA (693bp) protein (231aa)
Ser/Thr phosphatase family protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C9P3_9CLOT
hypothetical protein
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:EFE13505.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
L2_040_365G1_scaffold_1200_25
unknown

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31739..32299
DNA (561bp) protein (187aa)

This feature has no annotations

L2_040_365G1_scaffold_1200_26
unknown

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32299..32487
DNA (189bp) protein (63aa)

This feature has no annotations

L2_040_365G1_scaffold_1200_27
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32549..33391
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7AP36_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD55166.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
conserved hypothetical protein TIGR02452
Displaying 27 items

View Taxonomy