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L2_040_365G1_scaffold_1

Search features with annotation key words

Displaying items 1-30 of 458 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_365G1_scaffold_1_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

406..1407
DNA (1002bp) protein (334aa)
serA; D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
D-3-phosphoglycerate dehydrogenase n=3 Tax=Bifidobacterium bifidum RepID=I3WJ56_BIFBI
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:EKE51064.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_040_365G1_scaffold_1_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1444..2262)
DNA (819bp) protein (273aa)
ABC transporter, ATP-binding protein n=3 Tax=Bifidobacterium bifidum RepID=E4VC76_BIFBI
ABC transporter ATP-binding component {ECO:0000313|EMBL:BAQ98543.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
peptide/nickel ABC transporter ATP-binding protein
L2_040_365G1_scaffold_1_3
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2301..3101)
DNA (801bp) protein (267aa)
peptide ABC transporter substrate-binding protein (EC:3.6.3.24)
Solute-binding protein of ABC transporter system for peptides n=4 Tax=Bifidobacterium RepID=E4NY00_BIFBP
Solute-binding protein of ABC transporter system for peptides {ECO:0000313|EMBL:CDB22851.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_040_365G1_scaffold_1_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3098..4057)
DNA (960bp) protein (320aa)
ABC-type dipeptide/oligopeptide/nickel transportsystems permease component n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJ59_BIFBI
ABC-type dipeptide/oligopeptide/nickel transportsystems permease component
ABC-type dipeptide/oligopeptide/nickel transportsystems permease component {ECO:0000313|EMBL:AFL04922.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_040_365G1_scaffold_1_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4054..5031)
DNA (978bp) protein (326aa)
ABC transporter, permease protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CFI2_BIFBI
Peptide ABC transporter, solute-binding protein {ECO:0000313|EMBL:KFI43677.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
gsiC; glutathione transport system permease
L2_040_365G1_scaffold_1_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5129..6799)
DNA (1671bp) protein (557aa)
Peptide/nickel transport system, substrate-binding protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EP97_BIFBS
peptide/nickel ABC transporter substrate-binding protein
Peptide/nickel transport system, substrate-binding protein {ECO:0000313|EMBL:ADO53514.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_365G1_scaffold_1_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6939..7748
DNA (810bp) protein (270aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Type III pantothenate kinase n=8 Tax=Bifidobacterium RepID=E3EP98_BIFBS
coaX; type III pantothenate kinase
L2_040_365G1_scaffold_1_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7810..9231)
DNA (1422bp) protein (474aa)
Sugar ABC transporter substrate-binding protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HX76_BIFBI
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:EKE51057.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
araN; putative arabinose-binding protein
L2_040_365G1_scaffold_1_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9374..9757)
DNA (384bp) protein (128aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=E4VC69_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83296.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
putative solute binding protein
L2_040_365G1_scaffold_1_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10022..12091)
DNA (2070bp) protein (690aa)
lacZ5; beta-galactosidase (EC:3.2.1.23)
Beta-galactosidase {ECO:0000256|PIRNR:PIRNR001084}; Short=Beta-gal {ECO:0000256|PIRNR:PIRNR001084};; EC=3.2.1.23 {ECO:0000256|PIRNR:PIRNR001084};; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Beta-galactosidase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NY78_BIFBP
L2_040_365G1_scaffold_1_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12331..13020)
DNA (690bp) protein (230aa)
Sugar ABC transporter permease n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EPA2_BIFBS
sugar ABC transporter permease
Sugar ABC transporter permease {ECO:0000313|EMBL:ADO53519.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_365G1_scaffold_1_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13252..14265
DNA (1014bp) protein (338aa)
LacI-type transcriptional regulator n=6 Tax=Bifidobacterium RepID=E3EPA3_BIFBS
LacI-type transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:BAQ98553.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_040_365G1_scaffold_1_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14330..14602)
DNA (273bp) protein (91aa)
D-isomer specific 2-hydroxyacid dehydrogenase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJ69_BIFBI
serA; D-isomer specific 2-hydroxyacid dehydrogenase
D-isomer specific 2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:AFL04932.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_040_365G1_scaffold_1_14
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14710..19173)
DNA (4464bp) protein (1488aa)
alpha-L-fucosidase (EC:3.2.1.51)
Alpha-L-fucosidase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GEM5_9BIFI
Alpha-L-fucosidase {ECO:0000313|EMBL:CDB22840.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_040_365G1_scaffold_1_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19369..19707)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJ71_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04934.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_040_365G1_scaffold_1_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22670..22960)
DNA (291bp) protein (97aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=1457183 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis EK3.;"
CRISPR-associated endoribonuclease Cas2 n=3 Tax=Bifidobacterium breve RepID=F6C694_BIFBA
CRISPR-associated protein Cas2
L2_040_365G1_scaffold_1_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23051..24082)
DNA (1032bp) protein (344aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1457183 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis EK3.;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L2X4_BIFBR
CRISPR-associated protein Cas1
L2_040_365G1_scaffold_1_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24079..24774)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L2X3_BIFBR
CRISPR-associated protein Cas4 {ECO:0000313|EMBL:KEY30698.1}; TaxID=1457183 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis EK3.;"
CRISPR-associated protein Cas4
L2_040_365G1_scaffold_1_19
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24901..25833)
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L2X2_BIFBR
CRISPR-associated protein
CRISPR-associated protein {ECO:0000313|EMBL:AHJ19772.1}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
L2_040_365G1_scaffold_1_20
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25826..27592)
DNA (1767bp) protein (589aa)
CRISPR-associated protein, Csd1 family n=2 Tax=Oscillibacter RepID=U2QK61_9FIRM
CRISPR-associated protein, Csd1 famil
CRISPR-associated protein, Csd1 famil {ECO:0000313|EMBL:AHJ19773.1}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
L2_040_365G1_scaffold_1_21
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27589..28302)
DNA (714bp) protein (238aa)
CRISPR-associated protein Cas5, Dvulg subtype n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NPB3_9FIRM
CRISPR-associated protein
CRISPR-associated protein {ECO:0000313|EMBL:AHJ19774.1}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
L2_040_365G1_scaffold_1_22
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28521..30923)
DNA (2403bp) protein (801aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L2X1_BIFBR
CRISPR-associated helicase Cas3
CRISPR-associated helicase Cas3 {ECO:0000313|EMBL:AHJ19775.1}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
L2_040_365G1_scaffold_1_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31065..34391)
DNA (3327bp) protein (1109aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
ileS; isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=2 Tax=Bifidobacterium bifidum RepID=K2HR01_BIFBI
L2_040_365G1_scaffold_1_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34932..35306)
DNA (375bp) protein (125aa)
Uncharacterized protein n=4 Tax=Bifidobacterium bifidum RepID=U2CFF7_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53525.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_365G1_scaffold_1_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35563..37014
DNA (1452bp) protein (484aa)
aldH; aldehyde dehydrogenase (EC:1.2.1.5)
Aldehyde dehydrogenase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NY84_BIFBP
Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_365G1_scaffold_1_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(37272..38189)
DNA (918bp) protein (306aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2MWF9_BIFBI
Membrane protease-like protein
Uncharacterized protein {ECO:0000313|EMBL:KFI43696.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_040_365G1_scaffold_1_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(38354..39649)
DNA (1296bp) protein (432aa)
cysD; O-acetylhomoserine (thiol)-lyase (EC:2.5.1.49)
Cysteine synthase n=2 Tax=Bifidobacterium bifidum RepID=E3EPB1_BIFBS
Cysteine synthase {ECO:0000313|EMBL:ADO53528.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_365G1_scaffold_1_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

39671..39775
DNA (105bp) protein (35aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DNY9_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83272.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L2_040_365G1_scaffold_1_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(39794..41128)
DNA (1335bp) protein (445aa)
metC1; cystathionine beta-lyase (EC:4.4.1.8)
Putative cystathionine beta-lyase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CFF3_BIFBI
Putative cystathionine beta-lyase {ECO:0000313|EMBL:ERI83270.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_040_365G1_scaffold_1_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

41434..42822
DNA (1389bp) protein (463aa)
NADH oxidoreductase n=2 Tax=Bifidobacterium bifidum RepID=E3EPB3_BIFBS
NADH oxidoreductase
NADH oxidoreductase {ECO:0000313|EMBL:ADO53530.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Displaying items 1-30 of 458 in total

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