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L2_040_365G1_scaffold_2

Search features with annotation key words

Displaying items 1-30 of 347 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_040_365G1_scaffold_2_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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3..503
DNA (501bp) protein (167aa)
Integrase core domain protein (Fragment) n=2 Tax=Bifidobacterium bifidum RepID=E4VAL7_BIFBI
IS30 family transposase
Integrase core domain protein {ECO:0000313|EMBL:EFR49455.1}; Flags: Fragment;; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_040_365G1_scaffold_2_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

674..2152
DNA (1479bp) protein (493aa)
Putative DNA-binding protein containing ATP-binding domain {ECO:0000313|EMBL:KFI42842.1}; EC=3.6.4.12 {ECO:0000313|EMBL:KFI42842.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Possible DNA-binding protein containing ATP-binding domain n=5 Tax=Bifidobacterium bifidum RepID=E4P191_BIFBP
DNA-binding protein containing ATP-binding domain
L2_040_365G1_scaffold_2_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2157..3596)
DNA (1440bp) protein (480aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2H8M9_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE50351.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
ABC permease
L2_040_365G1_scaffold_2_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3583..4830)
DNA (1248bp) protein (416aa)
ABC transporter, permease n=4 Tax=Bifidobacterium RepID=I3WHK9_BIFBI
ABC transporter permease
ABC transporter, permease {ECO:0000313|EMBL:AFL04372.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_040_365G1_scaffold_2_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4947..5930)
DNA (984bp) protein (328aa)
ABC transporter ATP-binding protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M6V6_BIFBI
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EKF16770.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
ABC transporter ATP-binding protein
L2_040_365G1_scaffold_2_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6075..6338)
DNA (264bp) protein (88aa)
Cation-transporting ATPase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I6A6_BIFBI
Cation-transporting ATPase {ECO:0000313|EMBL:EKE50354.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
pacL; cation-transporting ATPase
L2_040_365G1_scaffold_2_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6401..7684
DNA (1284bp) protein (428aa)
Histidine kinase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CD47_BIFBI
Histidine kinase {ECO:0000313|EMBL:ERI82465.1}; Two-component sensor kinase {ECO:0000313|EMBL:BAQ97980.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
histidine kinase
L2_040_365G1_scaffold_2_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7681..8373
DNA (693bp) protein (231aa)
Response regulatorof two-component system {ECO:0000313|EMBL:KFI42836.1}; EC=3.1.1.61 {ECO:0000313|EMBL:KFI42836.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Response regulator receiver domain protein n=2 Tax=Bifidobacterium bifidum RepID=U2DRU6_BIFBI
response regulator of two-component system
L2_040_365G1_scaffold_2_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8424..9047)
DNA (624bp) protein (208aa)
Uncharacterized protein n=7 Tax=Bifidobacterium bifidum RepID=E4V972_BIFBI
putative pit accessory protein
Uncharacterized protein {ECO:0000313|EMBL:KFI42835.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_040_365G1_scaffold_2_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9098..10159)
DNA (1062bp) protein (354aa)
Low-affinity inorganic phosphate transporter n=3 Tax=Bifidobacterium RepID=E3EQW2_BIFBS
Low-affinity inorganic phosphate transporter
Low-affinity inorganic phosphate transporter {ECO:0000313|EMBL:ADO53004.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_365G1_scaffold_2_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10397..12874)
DNA (2478bp) protein (826aa)
xylulose-5-phosphate/fructose-6-phosphate phosphoketolase (EC:4.1.2.22)
Probable phosphoketolase {ECO:0000256|HAMAP-Rule:MF_01403}; EC=4.1.2.- {ECO:0000256|HAMAP-Rule:MF_01403};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Probable phosphoketolase n=7 Tax=Bifidobacterium bifidum RepID=E3EQW1_BIFBS
L2_040_365G1_scaffold_2_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13403..14965
DNA (1563bp) protein (521aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DRU9_BIFBI
guaA; GMP synthase
L2_040_365G1_scaffold_2_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15506..16138)
DNA (633bp) protein (211aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4V968_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53001.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_365G1_scaffold_2_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16297..16512
DNA (216bp) protein (72aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4V965_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR50158.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_040_365G1_scaffold_2_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16482..16700)
DNA (219bp) protein (73aa)
Phage transcriptional regulator n=3 Tax=Bifidobacterium bifidum RepID=I3WHJ1_BIFBI
alpA; phage transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:ADO52999.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_365G1_scaffold_2_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17312..17953
DNA (642bp) protein (214aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=I3WHJ0_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52998.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_365G1_scaffold_2_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18761..19432)
DNA (672bp) protein (224aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=I3WHI7_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52996.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_365G1_scaffold_2_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19997..21478
DNA (1482bp) protein (494aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=I3WHI6_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04349.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_040_365G1_scaffold_2_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21475..23289
DNA (1815bp) protein (605aa)
phosphate acetyltransferase n=1 Tax=Bifidobacterium bifidum RepID=UPI00035EE886
pta; phosphate acetyltransferase
Phosphate acetyltransferase {ECO:0000313|EMBL:ADO52994.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_365G1_scaffold_2_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23570..24799
DNA (1230bp) protein (410aa)
ackA; acetate kinase (EC:2.7.2.1)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Acetate kinase n=6 Tax=Bifidobacterium RepID=I3WHI4_BIFBI
L2_040_365G1_scaffold_2_21
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24913..26424)
DNA (1512bp) protein (504aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
aroA; 3-phosphoshikimate 1-carboxyvinyl transferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CEM7_BIFBI
L2_040_365G1_scaffold_2_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26465..27082
DNA (618bp) protein (206aa)
Peptidase E {ECO:0000313|EMBL:KFI42827.1}; EC=3.4.13.21 {ECO:0000313|EMBL:KFI42827.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Peptidase E n=5 Tax=Bifidobacterium RepID=E3EQU9_BIFBS
putative peptidase
L2_040_365G1_scaffold_2_23
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27560..28279
DNA (720bp) protein (240aa)
Integrase/recombinase (XerD/RipX family) n=2 Tax=Bifidobacterium RepID=E3EQU8_BIFBS
Integrase/recombinase
Integrase/recombinase (XerD/RipX family) {ECO:0000313|EMBL:CDB22266.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_040_365G1_scaffold_2_24
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28794..30158
DNA (1365bp) protein (455aa)
Conserved hypothetical membrane spanning protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQU7_BIFBS
Conserved hypothetical membrane spanning protein {ECO:0000313|EMBL:CDB22265.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L2_040_365G1_scaffold_2_25
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30234..32405)
DNA (2172bp) protein (724aa)
glgX; glycogen operon protein GlgX (EC:3.2.1.68)
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Glycogen operon protein glgX n=4 Tax=Bifidobacterium RepID=E3EQU6_BIFBS
L2_040_365G1_scaffold_2_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32438..33169)
DNA (732bp) protein (244aa)
phosphohydrolase (EC:3.6.1.13)
Phosphohydrolase (MutT/nudix family protein) n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P171_BIFBP
Putative nudix hydrolase {ECO:0000313|EMBL:AFL04341.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_040_365G1_scaffold_2_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33223..34140)
DNA (918bp) protein (306aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Putative GTP cyclohydrolase 1 type 2 n=2 Tax=Bifidobacterium bifidum RepID=E4V942_BIFBI
hypothetical protein
L2_040_365G1_scaffold_2_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34182..37013)
DNA (2832bp) protein (944aa)
DNA-directed DNA polymerase {ECO:0000313|EMBL:EFR50133.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EFR50133.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
DNA-directed DNA polymerase n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V941_BIFBI
polA; DNA polymerase I
L2_040_365G1_scaffold_2_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(37010..37786)
DNA (777bp) protein (259aa)
Transcriptional regulator n=8 Tax=Bifidobacterium RepID=E3EQU2_BIFBS
amiR; putative two-component system responseregulator
Transcriptional regulator {ECO:0000313|EMBL:ADO52984.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_040_365G1_scaffold_2_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

38194..38793
DNA (600bp) protein (200aa)
aspA; ADP-ribose pyrophosphatase (EC:3.6.1.13)
AspA ADP-ribose pyrophosphatase n=5 Tax=Bifidobacterium RepID=E4P167_BIFBP
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:EKF16358.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Displaying items 1-30 of 347 in total

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