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L2_041_000G1_scaffold_68

Search features with annotation key words

Displaying items 1-30 of 146 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_041_000G1_scaffold_68_1
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5..856)
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0074 RepID=S2Y829_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD60211.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
AraC-type DNA-binding domain-containing proteins
L2_041_000G1_scaffold_68_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1019..4084
DNA (3066bp) protein (1022aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 PF83_9CLOT">RepID=R6PF83_9CLOT
glycoside hydrolase family protein
L2_041_000G1_scaffold_68_3
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4163..5470
DNA (1308bp) protein (436aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PN13_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EGC75923.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
sugar (Glycoside-Pentoside-Hexuronide) transporter
L2_041_000G1_scaffold_68_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5638..6429
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PD60_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22238.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
transcriptional regulator, AraC family
L2_041_000G1_scaffold_68_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7055..7369
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QJV6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22237.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_041_000G1_scaffold_68_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8313..10178
DNA (1866bp) protein (622aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PUQ4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22236.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Fe-S oxidoreductase
L2_041_000G1_scaffold_68_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10162..10854
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 PF80_9CLOT">RepID=R6PF80_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22235.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_041_000G1_scaffold_68_8
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10854..12038
DNA (1185bp) protein (395aa)
Ribonuclease, Rne/Rng family {ECO:0000313|EMBL:EEA82463.1}; EC=3.1.4.- {ECO:0000313|EMBL:EEA82463.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Ribonucleases G and E (EC:3.1.26.-)
Ribonuclease, Rne/Rng family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNH1_9CLOT
L2_041_000G1_scaffold_68_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12035..12817
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNH0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82462.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_041_000G1_scaffold_68_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12831..13313
DNA (483bp) protein (161aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=1 Tax=Clostridium nexile CAG:348 RepID=R6QJV1_9CLOT
ybaK/ebsC protein
L2_041_000G1_scaffold_68_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13425..14744
DNA (1320bp) protein (440aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
aspartate kinase (EC:2.7.2.4)
Aspartokinase n=2 Tax=Clostridium RepID=B6FNG8_9CLOT
L2_041_000G1_scaffold_68_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14762..15181
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 PF76_9CLOT">RepID=R6PF76_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22230.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_041_000G1_scaffold_68_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15220..15483
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PN00_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22229.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_041_000G1_scaffold_68_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


15614..15922
DNA (309bp) protein (103aa)
50S ribosomal protein L21 n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNG5_9CLOT
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
LSU ribosomal protein L21P
L2_041_000G1_scaffold_68_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15935..16267
DNA (333bp) protein (111aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FNG4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22154.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted ribosomal protein
L2_041_000G1_scaffold_68_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


16272..16556
DNA (285bp) protein (95aa)
50S ribosomal protein L27 n=2 Tax=Clostridium RepID=B6FNG3_9CLOT
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
LSU ribosomal protein L27P
L2_041_000G1_scaffold_68_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16671..17954
DNA (1284bp) protein (428aa)
GTPase Obg n=1 Tax=Clostridium nexile CAG:348 RepID=R6QJN3_9CLOT
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Obg family GTPase CgtA
L2_041_000G1_scaffold_68_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17970..18260
DNA (291bp) protein (97aa)
RNA-binding protein, YhbY family n=2 Tax=Clostridium RepID=B6FNG1_9CLOT
RNA-binding protein, YhbY family {ECO:0000313|EMBL:EEA82453.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
conserved hypothetical protein TIGR00253
L2_041_000G1_scaffold_68_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18284..18916
DNA (633bp) protein (211aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNG0_9CLOT
L2_041_000G1_scaffold_68_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18894..19472
DNA (579bp) protein (193aa)
Hydrolase, HD family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNF9_9CLOT
Hydrolase, HD family {ECO:0000313|EMBL:EEA82451.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
putative nicotinate-nucleotide adenylyltransferase
L2_041_000G1_scaffold_68_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19475..19825
DNA (351bp) protein (117aa)
Ribosomal silencing factor RsfS n=2 Tax=Clostridium RepID=B6FNF8_9CLOT
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
iojap-related protein
L2_041_000G1_scaffold_68_22
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19862..21301)
DNA (1440bp) protein (480aa)
Aldehyde dehydrogenase (NAD) family protein {ECO:0000313|EMBL:EEA82449.1}; EC=1.2.1.- {ECO:0000313|EMBL:EEA82449.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
gapN; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.9)
Aldehyde dehydrogenase (NAD) family protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNF7_9CLOT
L2_041_000G1_scaffold_68_23
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21654..22271)
DNA (618bp) protein (206aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
LexA repressor n=2 Tax=Clostridium RepID=B6FNF6_9CLOT
transcriptional repressor, LexA family protein
L2_041_000G1_scaffold_68_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22533..22826
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 PF08_9CLOT">RepID=R6PF08_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22145.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_041_000G1_scaffold_68_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23006..24076
DNA (1071bp) protein (357aa)
Phage integrase SAM-like domain protein n=2 Tax=Clostridium RepID=B6FNF4_9CLOT
Phage integrase SAM-like domain protein {ECO:0000313|EMBL:EEA82446.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Site-specific recombinase XerD
L2_041_000G1_scaffold_68_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24131..24577)
DNA (447bp) protein (149aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160046};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
D-tyrosyl-tRNA(Tyr) deacylase (EC:3.1.-.-)
D-tyrosyl-tRNA(Tyr) deacylase n=2 Tax=Clostridium RepID=B6FNF3_9CLOT
L2_041_000G1_scaffold_68_27
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24732..25466
DNA (735bp) protein (245aa)
PP-loop family protein n=2 Tax=Clostridium RepID=B6FNF2_9CLOT
PP-loop family protein {ECO:0000313|EMBL:EEA82444.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
PP-loop domain-containing protein
L2_041_000G1_scaffold_68_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25512..26156)
DNA (645bp) protein (215aa)
Cytidylate kinase (EC:2.7.4.14)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FNF1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82443.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_041_000G1_scaffold_68_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26259..27176)
DNA (918bp) protein (306aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Pseudouridine synthase, RluA family n=2 Tax=Clostridium RepID=B6FNF0_9CLOT
RluA family pseudouridine synthase
L2_041_000G1_scaffold_68_30
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27179..27721)
DNA (543bp) protein (181aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase n=1 Tax=Clostridium nexile CAG:348 RepID=R6PMR6_9CLOT
Displaying items 1-30 of 146 in total

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