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L2_041_000G1_scaffold_406

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_041_000G1_scaffold_406_1
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..1436
DNA (1434bp) protein (478aa)
Melibiose carrier protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IWQ0_9FIRM
Melibiose carrier protein {ECO:0000313|EMBL:CDB42407.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
melB; melibiose carrier protein
L2_041_000G1_scaffold_406_2
unknown

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1694..3034
DNA (1341bp) protein (447aa)

This feature has no annotations

L2_041_000G1_scaffold_406_3
unknown

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3415..4761
DNA (1347bp) protein (449aa)

This feature has no annotations

L2_041_000G1_scaffold_406_4
unknown

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comp(4660..4893)
DNA (234bp) protein (78aa)

This feature has no annotations

L2_041_000G1_scaffold_406_5
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5059..5790)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HT99_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB41078.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
L2_041_000G1_scaffold_406_6
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5792..7057)
DNA (1266bp) protein (422aa)
Aluminum resistance protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6N162_9CLOT
Aluminum resistance protein {ECO:0000313|EMBL:CDC04770.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
ynbB; putative protein YnbB
L2_041_000G1_scaffold_406_7
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7066..7869)
DNA (804bp) protein (268aa)
Acetyltransferase GNAT family n=1 Tax=Clostridium leptum CAG:27 RepID=R6NEX6_9CLOT
Acetyltransferase GNAT family {ECO:0000313|EMBL:CDC04771.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein
L2_041_000G1_scaffold_406_8
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7835..8863)
DNA (1029bp) protein (343aa)
pepA; putative Glutamyl aminopeptidase (EC:3.4.11.7)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NCB2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC08815.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
L2_041_000G1_scaffold_406_9
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8864..9871)
DNA (1008bp) protein (336aa)
M42 glutamyl aminopeptidase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I3K9_9FIRM
M42 glutamyl aminopeptidase {ECO:0000313|EMBL:CDB41074.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
L2_041_000G1_scaffold_406_10
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10085..12934
DNA (2850bp) protein (950aa)
Bacterial membrane protein YfhO n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HZ85_9FIRM
Bacterial membrane protein YfhO {ECO:0000313|EMBL:CDB42380.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Predicted membrane protein
L2_041_000G1_scaffold_406_11
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13032..15668)
DNA (2637bp) protein (879aa)
yloB1; calcium-translocating P-type ATPase YloB (EC:3.6.3.8)
Calcium-translocating P-type ATPase, PMCA-type n=2 Tax=Clostridium RepID=A7VSB2_9CLOT
Calcium-translocating P-type ATPase PMCA-type {ECO:0000313|EMBL:CDC06141.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
L2_041_000G1_scaffold_406_12
unknown

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comp(15882..16559)
DNA (678bp) protein (226aa)

This feature has no annotations

L2_041_000G1_scaffold_406_13
Peptococcaceae bacterium SCADC1_2_3, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16546..17208)
DNA (663bp) protein (221aa)
ABC transporter related n=1 Tax=Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47) RepID=D9TGS1_CALOO
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFD41710.1}; TaxID=1487582 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium SCADC1_2_3.;"
ABC transporter-like protein
L2_041_000G1_scaffold_406_14
unknown

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comp(17258..18049)
DNA (792bp) protein (264aa)

This feature has no annotations

L2_041_000G1_scaffold_406_15
Caldicellulosiruptor obsidiansis, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(18051..18884)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47) RepID=D9TGR8_CALOO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL41404.1}; TaxID=608506 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47).;"
L2_041_000G1_scaffold_406_16
unknown

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comp(18951..19358)
DNA (408bp) protein (136aa)

This feature has no annotations

L2_041_000G1_scaffold_406_17
unknown

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comp(19851..20492)
DNA (642bp) protein (214aa)

This feature has no annotations

L2_041_000G1_scaffold_406_18
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20658..23219)
DNA (2562bp) protein (854aa)
wapA2; tRNA3(Ser)-specific nuclease WapA (EC:3.1.-.-)
RHS repeat-associated core domain protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VXQ5_9CLOT
RHS repeat-associated core domain protein {ECO:0000313|EMBL:EDO59332.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
L2_041_000G1_scaffold_406_19
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(23576..23917)
DNA (342bp) protein (114aa)
50S ribosomal protein L17 n=1 Tax=Clostridium sp. CAG:413 RepID=R6PPK7_9CLOT
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
LSU ribosomal protein L17P
L2_041_000G1_scaffold_406_20
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23946..24896)
DNA (951bp) protein (317aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Clostridium sp. CAG:413 RepID=R6NZK3_9CLOT
L2_041_000G1_scaffold_406_21
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(24975..25601)
DNA (627bp) protein (209aa)
30S ribosomal protein S4 n=1 Tax=Clostridium sp. CAG:413 RepID=R6NKH4_9CLOT
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
rpsD; 30S ribosomal protein S4
L2_041_000G1_scaffold_406_22
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25627..26034)
DNA (408bp) protein (136aa)
30S ribosomal protein S11 n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HW85_9FIRM
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
30S ribosomal protein S11
L2_041_000G1_scaffold_406_23
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(26050..26418)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I483_9FIRM
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
SSU ribosomal protein S13P
L2_041_000G1_scaffold_406_24
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26591..26809)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=1 Tax=Eubacterium sp. CAG:180 RepID=R5N173_9FIRM
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
infA; translation initiation factor IF-1
L2_041_000G1_scaffold_406_25
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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comp(26813..27082)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6ZM64_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD31512.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
hypothetical protein predicted by Glimmer/Critica
L2_041_000G1_scaffold_406_26
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27095..27844)
DNA (750bp) protein (250aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
methionine aminopeptidase, type I (EC:3.4.11.18)
Methionine aminopeptidase n=2 Tax=root RepID=R5MHU3_9FIRM
L2_041_000G1_scaffold_406_27
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27847..28479)
DNA (633bp) protein (211aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
Adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5Y630_9FIRM
L2_041_000G1_scaffold_406_28
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(28501..29850)
DNA (1350bp) protein (450aa)
Protein translocase subunit SecY n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5XYH3_9FIRM
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
preprotein translocase subunit SecY
L2_041_000G1_scaffold_406_29
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(29852..30295)
DNA (444bp) protein (148aa)
50S ribosomal protein L15 n=2 Tax=root RepID=R5N271_9FIRM
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
rplO; 50S ribosomal protein L15
L2_041_000G1_scaffold_406_30
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(30314..30493)
DNA (180bp) protein (60aa)
50S ribosomal protein L30 n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6E4I6_9FIRM
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
LSU ribosomal protein L30P
Displaying items 1-30 of 52 in total

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