ggKbase home page

L2_041_000G1_scaffold_468

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_041_000G1_scaffold_468_1
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..1125)
DNA (1125bp) protein (375aa)
Signal protein PDZ n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FY54_CLOPA
Signal protein PDZ {ECO:0000313|EMBL:ETD68372.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
C-terminal PDZ domain-containing protein
L2_041_000G1_scaffold_468_2
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1142..2401)
DNA (1260bp) protein (420aa)
ctpA; carboxy-terminal processing protease CtpA (EC:3.4.21.102)
C-processing peptidase subfamily n=3 Tax=Clostridium butyricum RepID=B1QWK8_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ94583.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
L2_041_000G1_scaffold_468_3
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2523..3461)
DNA (939bp) protein (313aa)
Cell division protein FtsX n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MXJ1_CLOSA
ftsX; cell division protein FtsX
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L2_041_000G1_scaffold_468_4
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3403..4089)
DNA (687bp) protein (229aa)
Cell division ATP-binding protein FtsE n=3 Tax=Clostridium butyricum RepID=B1QWL0_CLOBU
Cell division transporter, ATP-binding protein FtsE {ECO:0000313|EMBL:KJZ85757.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
ftsE; cell division ATP-binding protein FtsE
L2_041_000G1_scaffold_468_5

Not on your lists

comp(4355..5209)
DNA (855bp) protein (285aa)
Transporter n=2 Tax=Clostridium butyricum RepID=B1QWL1_CLOBU
Transporter {ECO:0000313|EMBL:ETJ16607.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
yvjA; UPF0750 membrane protein YvjA
L2_041_000G1_scaffold_468_6
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5381..6325)
DNA (945bp) protein (315aa)
tktB; transketolase subunit B (EC:2.2.1.1)
Transketolase, alpha subunit n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TT43_9CLOT
Transketolase, alpha subunit {ECO:0000313|EMBL:EKQ50421.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
L2_041_000G1_scaffold_468_7
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6325..7146)
DNA (822bp) protein (274aa)
Transketolase domain protein n=2 Tax=Clostridium RepID=A6M2Z7_CLOB8
transketolase domain-containing protein
Transketolase domain protein {ECO:0000313|EMBL:ABR36977.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L2_041_000G1_scaffold_468_8

Not on your lists

comp(7411..7803)
DNA (393bp) protein (131aa)
mRNA interferase n=4 Tax=Clostridium butyricum RepID=B1QWL4_CLOBU
Transcriptional modulator of MazE/toxin, MazF {ECO:0000313|EMBL:ETJ16610.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
transcriptional modulator of MazE/toxin MazF
L2_041_000G1_scaffold_468_9
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7800..8018)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7MAP4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHJ02303.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
hypothetical protein
L2_041_000G1_scaffold_468_10
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8264..8878)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TH43_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKQ50425.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
putative secreted protein
L2_041_000G1_scaffold_468_11
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8947..10452)
DNA (1506bp) protein (502aa)
nnr: bifunctional NAD(P)H-hydrate repair enzyme Nnr (EC:4.2.1.136 5.1.99.6)
Nnr: bifunctional NAD(P)H-hydrate repair enzyme Nnr {ECO:0000313|EMBL:AGX45277.1}; EC=4.2.1.136 {ECO:0000313|EMBL:AGX45277.1};; EC=5.1.99.6 {ECO:0000313|EMBL:AGX45277.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Nnr: bifunctional NAD(P)H-hydrate repair enzyme Nnr n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5N0F8_CLOSA
L2_041_000G1_scaffold_468_12
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10453..10824)
DNA (372bp) protein (124aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237180};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
acpS; holo-[acyl-carrier-protein] synthase AcpS (EC:2.7.8.7)
Holo-[acyl-carrier-protein] synthase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TUE0_9CLOT
L2_041_000G1_scaffold_468_13
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10875..11207)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MWU4_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX45279.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L2_041_000G1_scaffold_468_14
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11696..12043)
DNA (348bp) protein (116aa)
Single-stranded DNA-binding protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U627_9CLOT
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
ssb2; single-stranded DNA-binding protein 1
L2_041_000G1_scaffold_468_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12122..12970)
DNA (849bp) protein (283aa)
Putative ribonuclease-like protein YfkH n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5N025_CLOSA
Ribonuclease BN {ECO:0000313|EMBL:KHD15468.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
yfkH; putative ribonuclease-like protein YfkH
L2_041_000G1_scaffold_468_16
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13175..14491)
DNA (1317bp) protein (439aa)
UDP-N-acetyl-D-glucosamine dehydrogenase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FY72_CLOPA
UDP-glucose 6-dehydrogenase
UDP-N-acetyl-D-glucosamine dehydrogenase {ECO:0000313|EMBL:ETD68387.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
L2_041_000G1_scaffold_468_17
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14598..15176)
DNA (579bp) protein (193aa)
wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-D-glucuronate N-acetyltransferase WbpD (EC:2.3.1.-)
UDP-2-acetamido-3-amino-2, 3-dideoxy-D-glucuronate N-acetyltransferase WbpD {ECO:0000313|EMBL:AGF59283.1}; EC=2.3.1.- {ECO:0000313|EMBL:AGF59283.1};; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
UDP-2-acetamido-3-amino-2, 3-dideoxy-D-glucuronate N-acetyltransferase WbpD n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MT47_9CLOT
L2_041_000G1_scaffold_468_18
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15187..16371)
DNA (1185bp) protein (395aa)
Pleiotropic regulatory protein n=1 Tax=Clostridium botulinum RepID=UPI000376F4F8
erythromycin biosynthesis sensory transduction protein eryC1
Pleiotropic regulatory protein {ECO:0000313|EMBL:KIL08155.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L2_041_000G1_scaffold_468_19
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16547..18832)
DNA (2286bp) protein (762aa)
Rad3-like DNA helicase (EC:3.6.4.12)
Rad3-like DNA helicase {ECO:0000313|EMBL:AGF59285.1}; EC=3.6.4.12 {ECO:0000313|EMBL:AGF59285.1};; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
Rad3-like DNA helicase n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1M151_9CLOT
L2_041_000G1_scaffold_468_20
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18996..19586)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 5521 RepID=B1QWM9_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ94675.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
hypothetical protein
L2_041_000G1_scaffold_468_21
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20154..20399
DNA (246bp) protein (82aa)
Transcriptional regulator, AbrB family n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5N0H5_CLOSA
transcriptional regulator, AbrB family
Transcriptional regulator, AbrB family {ECO:0000313|EMBL:AGX45292.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L2_041_000G1_scaffold_468_22
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20471..21316)
DNA (846bp) protein (282aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
rsmI; ribosomal RNA small subunit methyltransferase I (EC:2.1.1.198)
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TH53_9CLOT
L2_041_000G1_scaffold_468_23
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21319..22071)
DNA (753bp) protein (251aa)
Methyltransferase small n=1 Tax=Clostridium sp. DL-VIII RepID=G7MAR1_9CLOT
Methyltransferase small {ECO:0000313|EMBL:EHJ02320.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
small; methyltransferase Small
L2_041_000G1_scaffold_468_24
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22249..23547)
DNA (1299bp) protein (433aa)
Cell wall-associated hydrolase, invasion-associated protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TUF3_9CLOT
Cell wall-associated hydrolase, invasion-associated protein {ECO:0000313|EMBL:EKQ50442.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
protein P54
L2_041_000G1_scaffold_468_25
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23946..24599
DNA (654bp) protein (218aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JDX8_CLOBU
HAD family hydrolase {ECO:0000313|EMBL:KHD15457.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
L2_041_000G1_scaffold_468_26
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24680..25426)
DNA (747bp) protein (249aa)
prsA2; foldase protein PrsA (EC:5.2.1.8)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Foldase protein PrsA n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MXM3_CLOSA
L2_041_000G1_scaffold_468_27
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25586..26263
DNA (678bp) protein (226aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
ung; uracil-DNA glycosylase Ung (EC:3.2.2.27)
Uracil-DNA glycosylase n=1 Tax=Clostridium sp. DL-VIII RepID=G7MAR5_9CLOT
L2_041_000G1_scaffold_468_28

Not on your lists

26289..26696
DNA (408bp) protein (136aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=M8KHV8_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ETJ16633.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L2_041_000G1_scaffold_468_29
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27353..28324)
DNA (972bp) protein (324aa)
Putative dehydrogenase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U2L4_9CLOT
Putative dehydrogenase {ECO:0000313|EMBL:EKQ54557.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
putative dehydrogenase
L2_041_000G1_scaffold_468_30
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28406..28576)
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CFF4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOR28008.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
putative membrane protein
Displaying items 1-30 of 41 in total

View Taxonomy