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L2_041_000G1_scaffold_1186

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_041_000G1_scaffold_1186_1
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(2..778)
DNA (777bp) protein (259aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
DNA polymerase IV n=3 Tax=Parabacteroides RepID=A7AL65_9PORP
DNA damage-inducible protein
L2_041_000G1_scaffold_1186_2
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(778..2361)
DNA (1584bp) protein (528aa)
C4-dicarboxylate anaerobic carrier n=3 Tax=Parabacteroides RepID=A7AL64_9PORP
C4-dicarboxylate anaerobic carrier {ECO:0000313|EMBL:CDD14196.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
C4-dicarboxylate anaerobic carrier
L2_041_000G1_scaffold_1186_3
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2358..3632)
DNA (1275bp) protein (425aa)
RmuC domain protein n=2 Tax=Parabacteroides merdae RepID=A7AL63_9PORP
RmuC domain protein {ECO:0000313|EMBL:EDN84735.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L2_041_000G1_scaffold_1186_4
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3793..4296
DNA (504bp) protein (168aa)
Probable thiol peroxidase {ECO:0000256|HAMAP-Rule:MF_00269}; EC=1.11.1.- {ECO:0000256|HAMAP-Rule:MF_00269};; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
Probable thiol peroxidase n=7 Tax=Parabacteroides RepID=A7AL62_9PORP
thiol peroxidase
L2_041_000G1_scaffold_1186_5
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4566..5258)
DNA (693bp) protein (231aa)
Transcriptional regulatory protein RprY n=3 Tax=Parabacteroides RepID=A7AL60_9PORP
Transcriptional regulatory protein RprY {ECO:0000313|EMBL:CDD14199.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
transcriptional regulator
L2_041_000G1_scaffold_1186_6
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5417..6598)
DNA (1182bp) protein (394aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=3 Tax=Parabacteroides RepID=A7AL59_9PORP
integral membrane sensor signal transduction histidine kinase
L2_041_000G1_scaffold_1186_7
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6751..8895
DNA (2145bp) protein (715aa)
TonB-dependent receptor n=2 Tax=Parabacteroides merdae RepID=A7AL58_9PORP
TonB-dependent receptor {ECO:0000313|EMBL:EDN84730.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L2_041_000G1_scaffold_1186_8
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9196..9582
DNA (387bp) protein (129aa)
DNA-binding protein HU n=3 Tax=Parabacteroides RepID=A7AL57_9PORP
DNA-binding protein HU {ECO:0000313|EMBL:EDN84729.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
non-specific DNA-binding protein HU-1
L2_041_000G1_scaffold_1186_9
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9729..11816
DNA (2088bp) protein (696aa)
VirE N-terminal domain protein n=2 Tax=Parabacteroides merdae RepID=A7AL55_9PORP
VirE N-terminal domain protein {ECO:0000313|EMBL:EDN84728.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
putative helicase
L2_041_000G1_scaffold_1186_10
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11944..12951
DNA (1008bp) protein (336aa)
CRISPR-associated endonuclease Cas3-HD n=2 Tax=Parabacteroides merdae RepID=A7AL54_9PORP
CRISPR-associated endonuclease Cas3-HD {ECO:0000313|EMBL:EDN84726.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
CRISPR-associated helicase Cas3/CRISPR-associated endonuclease Cas3-HD
L2_041_000G1_scaffold_1186_11
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12948..14168
DNA (1221bp) protein (407aa)
CRISPR-associated endonuclease Cas3-HD n=2 Tax=Parabacteroides merdae RepID=A7AL54_9PORP
CRISPR-associated endonuclease Cas3-HD {ECO:0000313|EMBL:EDN84726.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
CRISPR-associated helicase Cas3/CRISPR-associated endonuclease Cas3-HD
L2_041_000G1_scaffold_1186_12
unknown

Not on your lists

comp(15165..15260)
DNA (96bp) protein (32aa)

This feature has no annotations

L2_041_000G1_scaffold_1186_13
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17747..18433
DNA (687bp) protein (229aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AL48_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84720.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L2_041_000G1_scaffold_1186_14
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18305..18595)
DNA (291bp) protein (97aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=999418 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii CL02T12C30.;"
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6AX95_9PORP
CRISPR-associated protein Cas2
L2_041_000G1_scaffold_1186_15
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18600..19634)
DNA (1035bp) protein (345aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
CRISPR-associated endonuclease Cas1 n=2 Tax=Parabacteroides merdae RepID=A7AL47_9PORP
CRISPR-associated protein, Cas1 family
L2_041_000G1_scaffold_1186_16
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19638..20306)
DNA (669bp) protein (223aa)
CRISPR-associated protein Cas4 n=2 Tax=Parabacteroides merdae RepID=A7AL46_9PORP
CRISPR-associated protein Cas4 {ECO:0000313|EMBL:EDN84718.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
CRISPR-associated protein Cas4
L2_041_000G1_scaffold_1186_17
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20303..21169)
DNA (867bp) protein (289aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AL45_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84717.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
protein Csd2 family protein
L2_041_000G1_scaffold_1186_18
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21182..22936)
DNA (1755bp) protein (585aa)
CRISPR-associated protein, Csd1 family n=2 Tax=Parabacteroides merdae RepID=A7AL44_9PORP
CRISPR-associated protein, Csd1 family {ECO:0000313|EMBL:EDN84716.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG
L2_041_000G1_scaffold_1186_19
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22933..23613)
DNA (681bp) protein (227aa)
CRISPR-associated protein Cas5, Dvulg subtype n=2 Tax=Parabacteroides merdae RepID=A7AL43_9PORP
CRISPR-associated protein Cas5, Dvulg subtype {ECO:0000313|EMBL:EDN84715.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
CRISPR-associated protein Cas5, subtype I-C/DVULG
L2_041_000G1_scaffold_1186_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23874..24050)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AL41_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84713.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L2_041_000G1_scaffold_1186_21
unknown

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comp(25643..25771)
DNA (129bp) protein (43aa)

This feature has no annotations

L2_041_000G1_scaffold_1186_22
unknown

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27044..27229
DNA (186bp) protein (62aa)

This feature has no annotations

L2_041_000G1_scaffold_1186_23
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27480..28775
DNA (1296bp) protein (432aa)
MATE efflux family protein n=2 Tax=Parabacteroides merdae RepID=A7AL36_9PORP
MATE efflux family protein {ECO:0000313|EMBL:EDN84708.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
DNA-damage-inducible protein F
L2_041_000G1_scaffold_1186_24
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28938..29114
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K5ZMN7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14205.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L2_041_000G1_scaffold_1186_25
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29281..30864)
DNA (1584bp) protein (528aa)
Acyl-CoA dehydrogenase C-terminal domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XCZ3_9PORP
Acyl-CoA dehydrogenase, C-terminal domain protein {ECO:0000313|EMBL:EDN84705.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
acyl-CoA dehydrogenase
L2_041_000G1_scaffold_1186_26
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30869..31888)
DNA (1020bp) protein (340aa)
Electron transfer flavoprotein FAD-binding domain protein n=3 Tax=Parabacteroides RepID=A7AL32_9PORP
Electron transfer flavoprotein FAD-binding domain protein {ECO:0000313|EMBL:EDN84704.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
electron transfer flavoprotein subunit alpha
L2_041_000G1_scaffold_1186_27
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31937..32842)
DNA (906bp) protein (302aa)
Electron transfer flavoprotein domain protein n=2 Tax=Parabacteroides merdae RepID=A7AL31_9PORP
Electron transfer flavoprotein domain protein {ECO:0000313|EMBL:EDN84703.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
electron transfer flavoprotein subunit beta
L2_041_000G1_scaffold_1186_28
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33169..36021)
DNA (2853bp) protein (951aa)
Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|SAAS:SAAS00022796}; EC=1.4.4.2 {ECO:0000256|SAAS:SAAS00022796};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
glycine dehydrogenase (EC:1.4.4.2)
Glycine dehydrogenase n=3 Tax=Parabacteroides RepID=A7AL29_9PORP
L2_041_000G1_scaffold_1186_29
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(36065..36703)
DNA (639bp) protein (213aa)
Metallo-beta-lactamase domain protein n=2 Tax=Parabacteroides merdae RepID=A7AL28_9PORP
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:EDN84700.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
metallo-beta-lactamase
L2_041_000G1_scaffold_1186_30
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(36700..37371)
DNA (672bp) protein (224aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AL27_9PORP
gidB; 16S rRNA methyltransferase GidB
Displaying items 1-30 of 38 in total

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