ggKbase home page

L2_041_000G1_scaffold_1223

Search features with annotation key words

Displaying items 1-30 of 79 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_041_000G1_scaffold_1223_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(113..820)
DNA (708bp) protein (236aa)
Uncharacterized protein n=20 Tax=Escherichia coli RepID=E9U0E6_ECOLX
membrane protein YqgA
Putative transport protein {ECO:0000313|EMBL:BAI56309.1}; TaxID=431946 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O150:H5 (strain SE15).;"
L2_041_000G1_scaffold_1223_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1219..3354
DNA (2136bp) protein (712aa)
Ornithine decarboxylase, constitutive {ECO:0000313|EMBL:EZJ49393.1}; EC=4.1.1.17 {ECO:0000313|EMBL:EZJ49393.1};; TaxID=1444228 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-005-03_S4_C2.;"
Ornithine decarboxylase, constitutive n=7 Tax=Escherichia coli RepID=L3B415_ECOLX
speC; ornithine decarboxylase
L2_041_000G1_scaffold_1223_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3403..4659)
DNA (1257bp) protein (419aa)
Nucleoside transport protein n=61 Tax=Escherichia coli RepID=D2NMD2_ECOS5
nucleoside permease
Nucleoside permease nupG {ECO:0000313|EMBL:ELJ68872.1}; TaxID=1169364 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE85.;"
L2_041_000G1_scaffold_1223_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4861..5940)
DNA (1080bp) protein (360aa)
mltC; membrane-bound lytic murein transglycosylase C (EC:2.4.-.-)
Membrane-bound lytic murein transglycosylase C {ECO:0000256|HAMAP-Rule:MF_01616, ECO:0000256|SAAS:SAAS00008923}; EC=4.2.2.n1 {ECO:0000256|HAMAP-Rule:MF_01616, ECO:0000256|SAAS:SAAS00008932};; Murein lyase C {ECO:0000256|HAMAP-Rule:MF_01616}; Flags: Precursor;; TaxID=1125641 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli P0301867.2.;"
Membrane-bound lytic murein transglycosylase C n=666 Tax=Enterobacteriaceae RepID=MLTC_ECO27
L2_041_000G1_scaffold_1223_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6005..6280)
DNA (276bp) protein (92aa)
Probable Fe(2+)-trafficking protein n=1284 Tax=Enterobacteriaceae RepID=FETP_ECO24
bacterial Fe(2+) trafficking protein
Probable Fe(2+)-trafficking protein {ECO:0000256|HAMAP-Rule:MF_00686, ECO:0000256|SAAS:SAAS00073862}; TaxID=1182658 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE51.;"
L2_041_000G1_scaffold_1223_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6308..7360)
DNA (1053bp) protein (351aa)
A/G-specific adenine glycosylase {ECO:0000313|EMBL:EHU07494.1}; EC=3.2.2.- {ECO:0000313|EMBL:EHU07494.1};; TaxID=868135 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC1C.;"
A/G-specific adenine glycosylase n=7 Tax=Escherichia coli RepID=L3B1R6_ECOLX
mutY; adenine DNA glycosylase
L2_041_000G1_scaffold_1223_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7521..8240
DNA (720bp) protein (240aa)
trmB; tRNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057, ECO:0000313|EMBL:CAR09577.2};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=585397 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O81 (strain ED1a).;"
tRNA (guanine-N(7)-)-methyltransferase n=305 Tax=Escherichia RepID=TRMB_ECOL6
L2_041_000G1_scaffold_1223_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8240..8566
DNA (327bp) protein (109aa)
Uncharacterized protein n=106 Tax=Escherichia coli RepID=V8IZV4_ECOLX
yggL; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EOU88923.1}; TaxID=1169353 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE36.;"
L2_041_000G1_scaffold_1223_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8750..9469
DNA (720bp) protein (240aa)
Uncharacterized protein YggN n=1247 Tax=Enterobacteriaceae RepID=YGGN_ECO57
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EOU88922.1}; TaxID=1169353 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE36.;"
L2_041_000G1_scaffold_1223_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9645..10691
DNA (1047bp) protein (349aa)
ansB; L-asparaginase II (EC:3.5.1.1)
L-asparaginase 2 n=166 Tax=Enterobacteriaceae RepID=C0KWF5_ECOLX
L-asparaginase 2 {ECO:0000313|EMBL:EOW95149.1}; TaxID=1181728 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE182.;"
L2_041_000G1_scaffold_1223_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10808..11815
DNA (1008bp) protein (336aa)
Uncharacterized protein n=26 Tax=Escherichia coli RepID=B3HRI2_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEJ55847.1}; TaxID=1444220 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S4_C1.;"
L2_041_000G1_scaffold_1223_12
Klebsiella pneumoniae, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11880..13016)
DNA (1137bp) protein (379aa)
Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW n=26 Tax=Escherichia coli RepID=L3B406_ECOLX
coproporphyrinogen III oxidase
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent,clustered with nucleoside-triphosphatase RdgB {ECO:0000313|EMBL:CDK72247.1}; TaxID=1432547 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella pneumoniae IS22.;"
L2_041_000G1_scaffold_1223_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13009..13602)
DNA (594bp) protein (198aa)
dITP/XTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405};; Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
dITP/XTP pyrophosphatase n=398 Tax=Escherichia RepID=RDGB_ECOL6
rdgB; non-canonical purine NTP pyrophosphatase
L2_041_000G1_scaffold_1223_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13610..13900)
DNA (291bp) protein (97aa)
UPF0235 protein YggU n=981 Tax=Enterobacteriaceae RepID=YGGU_ECO45
yggU; hypothetical protein
UPF0235 protein YggU {ECO:0000256|HAMAP-Rule:MF_00634}; TaxID=1280986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 36 (4-5675286).;"
L2_041_000G1_scaffold_1223_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13897..14463)
DNA (567bp) protein (189aa)
Uncharacterized protein YggT n=1349 Tax=Bacteria RepID=YGGT_ECO57
hypothetical protein
Resistance protein {ECO:0000313|EMBL:EOW01304.1}; TaxID=1182698 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE98.;"
L2_041_000G1_scaffold_1223_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14481..15185)
DNA (705bp) protein (235aa)
UPF0001 protein YggS n=1048 Tax=Enterobacteriaceae RepID=YGGS_ECO57
alanine racemase
Uncharacterized protein {ECO:0000313|EMBL:KEN88601.1}; TaxID=1444123 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-222-05_S3_C1.;"
L2_041_000G1_scaffold_1223_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15203..16183
DNA (981bp) protein (327aa)
Uncharacterized protein n=143 Tax=Escherichia RepID=Q1R777_ECOUT
yggR; transporter
Transporter {ECO:0000313|EMBL:CAR09422.1}; TaxID=585397 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O81 (strain ED1a).;"
L2_041_000G1_scaffold_1223_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16357..16773)
DNA (417bp) protein (139aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=941323 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli VR50.;"
Putative Holliday junction resolvase n=624 Tax=Escherichia RepID=RUVX_ECO45
Holliday junction resolvase-like protein
L2_041_000G1_scaffold_1223_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16773..17408)
DNA (636bp) protein (212aa)
UPF0301 protein YqgE n=1 Tax=Escherichia coli RepID=J7Q9K5_ECOLX
yqgE; hypothetical protein,hypothetical protein,Uncharacterized ACR, COG1678
UPF0301 protein YqgE {ECO:0000256|HAMAP-Rule:MF_00758}; TaxID=1182699 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE100.;"
L2_041_000G1_scaffold_1223_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17445..18395)
DNA (951bp) protein (317aa)
gshB; glutathione synthetase (EC:6.3.2.3)
Glutathione synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; EC=6.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00162};; GSH synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; Glutathione synthase {ECO:0000256|HAMAP-Rule:MF_00162}; TaxID=868140 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC2C.;"
Glutathione synthetase n=11 Tax=Escherichia coli RepID=L3B2Q6_ECOLX
L2_041_000G1_scaffold_1223_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18408..19139)
DNA (732bp) protein (244aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1444235 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-316-03_S4_C2.;"
Ribosomal RNA small subunit methyltransferase E n=9 Tax=Enterobacteriaceae RepID=C3SV73_ECOLX
yggJ; 16S ribosomal RNA methyltransferase RsmE
L2_041_000G1_scaffold_1223_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19219..19572)
DNA (354bp) protein (118aa)
endA; DNA-specific endonuclease I (EC:3.1.21.1)
Endonuclease-1 n=2 Tax=Escherichia coli RepID=I2ZIG7_ECOLX
Endonuclease-1 {ECO:0000313|EMBL:EQP47200.1}; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
L2_041_000G1_scaffold_1223_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19723..20178)
DNA (456bp) protein (152aa)
Protein SprT n=871 Tax=Enterobacteriaceae RepID=SPRT_ECO27
hypothetical protein
Protein SprT {ECO:0000256|HAMAP-Rule:MF_00746, ECO:0000256|SAAS:SAAS00012266}; TaxID=1116135 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP021552.12.;"
L2_041_000G1_scaffold_1223_24
Escherichia sp. KTE114, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20297..21691)
DNA (1395bp) protein (465aa)
Galactose-proton symporter n=932 Tax=Enterobacteriaceae RepID=GALP_ECOL6
galP; D-galactose transporter
Galactose-proton symporter {ECO:0000313|EMBL:EOU48071.1}; TaxID=1169321 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia sp. KTE114.;"
L2_041_000G1_scaffold_1223_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22128..23282)
DNA (1155bp) protein (385aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; TaxID=550672 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli B088.;"
S-adenosylmethionine synthase n=14 Tax=Escherichia coli RepID=L3B2Q1_ECOLX
metK; methionine adenosyltransferase MetK
L2_041_000G1_scaffold_1223_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23338..23589
DNA (252bp) protein (84aa)
Uncharacterized protein yqgD n=386 Tax=Escherichia RepID=E2QDT0_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETJ28212.1}; TaxID=1403943 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DORA_A_5_14_21.;"
L2_041_000G1_scaffold_1223_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24077..25561
DNA (1485bp) protein (495aa)
Biosynthetic arginine decarboxylase {ECO:0000256|HAMAP-Rule:MF_01417}; Short=ADC {ECO:0000256|HAMAP-Rule:MF_01417};; EC=4.1.1.19 {ECO:0000256|HAMAP-Rule:MF_01417, ECO:0000256|SAAS:SAAS00212226};; TaxID=1444258 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-005-03_S4_C3.;"
Biosynthetic arginine decarboxylase n=2 Tax=Escherichia coli RepID=T5MZP5_ECOLX
arginine decarboxylase
L2_041_000G1_scaffold_1223_28
Escherichia fergusonii, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25534..25752
DNA (219bp) protein (73aa)
Biosynthetic arginine decarboxylase {ECO:0000256|HAMAP-Rule:MF_01417}; Short=ADC {ECO:0000256|HAMAP-Rule:MF_01417};; EC=4.1.1.19 {ECO:0000256|HAMAP-Rule:MF_01417, ECO:0000256|SAAS:SAAS00212226};; TaxID=981367 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia fergusonii ECD227.;"
Biosynthetic arginine decarboxylase n=1 Tax=Escherichia coli P0302308.5 RepID=N3HHL6_ECOLX
speA; arginine decarboxylase SpeA
L2_041_000G1_scaffold_1223_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25898..26629
DNA (732bp) protein (244aa)
Uncharacterized protein n=14 Tax=Escherichia coli RepID=L3B1U9_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:EQP47194.1}; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
hypothetical protein
L2_041_000G1_scaffold_1223_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26765..27685
DNA (921bp) protein (307aa)
speB; agmatinase (EC:3.5.3.11)
Agmatinase {ECO:0000256|HAMAP-Rule:MF_01418, ECO:0000256|SAAS:SAAS00010856}; EC=3.5.3.11 {ECO:0000256|HAMAP-Rule:MF_01418, ECO:0000256|SAAS:SAAS00010854};; Agmatine ureohydrolase {ECO:0000256|HAMAP-Rule:MF_01418}; TaxID=868136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC1D.;"
Agmatinase n=377 Tax=Escherichia RepID=SPEB_ECO27
Displaying items 1-30 of 79 in total

View Taxonomy