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L2_041_000G1_scaffold_5

Search features with annotation key words

Displaying items 1-30 of 346 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_041_000G1_scaffold_5_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..414)
DNA (414bp) protein (138aa)
Flagellin C n=1 Tax=Clostridium difficile E10 RepID=U3VC30_CLODI
Flagellin C {ECO:0000313|EMBL:CCK99127.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
fliC; flagellin subunit
L2_041_000G1_scaffold_5_2
Terrisporobacter othiniensis, Terrisporobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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714..1232
DNA (519bp) protein (173aa)
Rubrerythrin family protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4V7D1_CLOBI
Uncharacterized protein {ECO:0000313|EMBL:KHS57468.1}; TaxID=1577792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Terrisporobacter.;" source="Terrisporobacter othiniensis.;"
rubrerythrin
L2_041_000G1_scaffold_5_3
unknown

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comp(2060..2215)
DNA (156bp) protein (52aa)

This feature has no annotations

L2_041_000G1_scaffold_5_4
unknown

Not on your lists

comp(2205..2429)
DNA (225bp) protein (75aa)

This feature has no annotations

L2_041_000G1_scaffold_5_5
unknown

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comp(2461..2622)
DNA (162bp) protein (54aa)

This feature has no annotations

L2_041_000G1_scaffold_5_6
unknown

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comp(2691..2891)
DNA (201bp) protein (67aa)

This feature has no annotations

L2_041_000G1_scaffold_5_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3097..4569
DNA (1473bp) protein (491aa)
Resolvase, N-terminal domain protein n=5 Tax=Clostridium difficile RepID=D5Q5M5_CLODI
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EFH14551.1}; TaxID=525258 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP07.;"
site-specific recombinase
L2_041_000G1_scaffold_5_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4722..5216
DNA (495bp) protein (165aa)
AhpC/TSA family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DCI0_CLODI
AhpC/TSA family protein {ECO:0000313|EMBL:EQF25599.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
bifunctional protein peroxiredoxin/chitinase
L2_041_000G1_scaffold_5_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5282..5881)
DNA (600bp) protein (200aa)
RNase H family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DGB6_CLODI
RNase H family protein {ECO:0000313|EMBL:EQF25565.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
putative ribonuclease
L2_041_000G1_scaffold_5_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6056..6871
DNA (816bp) protein (272aa)
Delta-lactam-biosynthetic de-N-acetylase {ECO:0000313|EMBL:EQF25578.1}; EC=3.5.-.- {ECO:0000313|EMBL:EQF25578.1};; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
Delta-lactam-biosynthetic de-N-acetylase n=1 Tax=Clostridium difficile CD160 RepID=T3DDG8_CLODI
exported polysaccharide deacetylase
L2_041_000G1_scaffold_5_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6930..7742)
DNA (813bp) protein (271aa)
Transcriptional regulator, MerR family n=6 Tax=Clostridium difficile RepID=D5Q678_CLODI
Transcriptional regulator, MerR family {ECO:0000313|EMBL:CCK97364.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
MerR family transcriptional regulator
L2_041_000G1_scaffold_5_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7924..9270
DNA (1347bp) protein (449aa)
MatE family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DFU8_CLODI
MatE family protein {ECO:0000313|EMBL:EQF25677.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
MATE family drug/sodium antiporter
L2_041_000G1_scaffold_5_13
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9375..10025)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4W0C0_CLOBI
ATP-binding protein {ECO:0000313|EMBL:KGJ48698.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
ATP-binding protein
L2_041_000G1_scaffold_5_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10102..10620)
DNA (519bp) protein (173aa)
Uncharacterized protein n=6 Tax=Clostridium difficile RepID=T3HMI5_CLODC
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CEJ98002.1}; Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CKH03158.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_041_000G1_scaffold_5_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10732..11688
DNA (957bp) protein (319aa)
Radical SAM protein family n=8 Tax=Clostridium difficile RepID=G6BWQ4_CLODI
Putative Fe-S oxidoreductase {ECO:0000313|EMBL:CDS86318.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
oxidoreductase Fe-S subunit
L2_041_000G1_scaffold_5_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11917..12501
DNA (585bp) protein (195aa)
Zinc dependent phospholipase C family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DGM9_CLODI
Zinc dependent phospholipase C family protein {ECO:0000313|EMBL:EQF25690.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
hypothetical protein
L2_041_000G1_scaffold_5_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12594..13376)
DNA (783bp) protein (261aa)
HAD hydrolase, IIB family protein n=1 Tax=Clostridium difficile CD69 RepID=T3A871_CLODI
Cof-like hydrolase {ECO:0000313|EMBL:EHJ28675.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
hydrolase
L2_041_000G1_scaffold_5_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13403..14662)
DNA (1260bp) protein (420aa)
Putative competence-damage inducible protein n=1 Tax=Clostridium difficile CD160 RepID=T3DGK8_CLODI
Putative competence-damage inducible protein {ECO:0000256|HAMAP-Rule:MF_00226}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
competence damage-inducible protein A
L2_041_000G1_scaffold_5_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14936..15832
DNA (897bp) protein (299aa)
ddl; D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
D-alanine--D-alanine ligase n=18 Tax=Clostridium difficile RepID=T2VPU0_CLODI
L2_041_000G1_scaffold_5_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15916..17364
DNA (1449bp) protein (483aa)
Bacterial regulatory s, gntR family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DFU3_CLODI
Bacterial regulatory s, gntR family protein {ECO:0000313|EMBL:EQF25672.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
GntR family transcriptional regulator
L2_041_000G1_scaffold_5_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17445..18332
DNA (888bp) protein (296aa)
D-alanyl-D-alanine carboxypeptidase family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DFV8_CLODI
D-alanyl-D-alanine carboxypeptidase family protein {ECO:0000313|EMBL:EQF25692.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
hypothetical protein
L2_041_000G1_scaffold_5_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18487..20418
DNA (1932bp) protein (644aa)
Heme ABC exporter, ATP-binding protein CcmA n=1 Tax=Clostridium difficile DA00310 RepID=T3ZMA1_CLODI
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EHJ31987.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
ABC transporter ATP-binding protein
L2_041_000G1_scaffold_5_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20643..22832)
DNA (2190bp) protein (730aa)
AMP-binding enzyme n=8 Tax=Clostridium difficile RepID=D5Q656_CLODI
AMP-binding enzyme {ECO:0000313|EMBL:EFH06678.1}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP08.;"
nonribosomal peptide synthetase
L2_041_000G1_scaffold_5_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23092..23688)
DNA (597bp) protein (199aa)
Uncharacterized protein n=10 Tax=Clostridium difficile RepID=T2U614_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQG77564.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
hypothetical protein
L2_041_000G1_scaffold_5_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23800..24663)
DNA (864bp) protein (288aa)
Putative muramoyltetrapeptide carboxypeptidase,S66 family {ECO:0000313|EMBL:CCL21504.1}; EC=3.4.17.13 {ECO:0000313|EMBL:CCL21504.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
muramoyltetrapeptide carboxypeptidase (EC:3.4.17.13)
LD-carboxypeptidase family protein n=4 Tax=Clostridium difficile RepID=T2VPT0_CLODI
L2_041_000G1_scaffold_5_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24828..26003
DNA (1176bp) protein (392aa)
Putative peptidase, M20D family n=1 Tax=Clostridium difficile CD002 RepID=U3W0I0_CLODI
Amidohydrolase {ECO:0000313|EMBL:EHJ31979.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
peptidase
L2_041_000G1_scaffold_5_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26014..26808
DNA (795bp) protein (265aa)
D-aminopeptidase family protein n=204 Tax=Clostridium difficile RepID=T3HPV9_CLODC
amino acid amidase
D-stereospecific aminopeptidase {ECO:0000313|EMBL:EHJ30396.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_041_000G1_scaffold_5_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26836..27318
DNA (483bp) protein (161aa)
Regulatory YrvL family protein n=1 Tax=Clostridium difficile CD69 RepID=T3A7W8_CLODI
hypothetical protein
Regulatory YrvL family protein {ECO:0000313|EMBL:EQF25687.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
L2_041_000G1_scaffold_5_29
unknown

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27360..27521
DNA (162bp) protein (54aa)

This feature has no annotations

L2_041_000G1_scaffold_5_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27775..28401
DNA (627bp) protein (209aa)
Bacterial regulatory s, gntR family protein n=158 Tax=Clostridium difficile RepID=C9XPQ0_CLODC
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CCL29458.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Displaying items 1-30 of 346 in total

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