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L2_041_000G1_scaffold_55

Search features with annotation key words

Displaying items 1-30 of 150 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_041_000G1_scaffold_55_1
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..994
DNA (993bp) protein (331aa)
Na+/H+ antiporter family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VPA6_CLOBI
Na+/H+ antiporter family protein {ECO:0000313|EMBL:EQK43348.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
Na+/H+ antiporter NhaC
L2_041_000G1_scaffold_55_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1709..3178
DNA (1470bp) protein (490aa)
Type I restriction enzyme M subunit n=1 Tax=Clostridium perfringens D str. JGS1721 RepID=B1V5G6_CLOPF
Type I restriction enzyme M subunit {ECO:0000313|EMBL:EDT70941.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
type I restriction-modification system methyltransferase subunit
L2_041_000G1_scaffold_55_3
Bacillus sonorensis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3183..4310
DNA (1128bp) protein (376aa)
type I restriction-modification system,specificity subunit S (EC:3.1.21.3)
Type I restriction-modification system,specificity subunit S n=1 Tax=Clostridium botulinum (strain H04402 065 / Type A5) RepID=E8ZL39_CLOB0
Type I restriction-modification system,specificity subunit S {ECO:0000313|EMBL:EME75519.1}; TaxID=1274524 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sonorensis L12.;"
L2_041_000G1_scaffold_55_4
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4423..7770
DNA (3348bp) protein (1116aa)
Helicase protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QLM4_9CLOT
Helicase protein {ECO:0000313|EMBL:EKY28630.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
helicase, type I site-specific restriction-modification system restriction subunit
L2_041_000G1_scaffold_55_5
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8330..8755
DNA (426bp) protein (142aa)
glucosyltransferase n=1 Tax=Clostridium sp. JC122 RepID=UPI0002890E1B
Glucosyltransferase {ECO:0000313|EMBL:KEZ87366.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
UDP-glycosyltransferase, MGT subfamily
L2_041_000G1_scaffold_55_6
unknown

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comp(8760..8873)
DNA (114bp) protein (38aa)

This feature has no annotations

L2_041_000G1_scaffold_55_7
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9007..10371
DNA (1365bp) protein (455aa)
K+ transport systems, NAD-binding component n=1 Tax=Ruminococcus torques L2-14 RepID=D4M1X3_9FIRM
K+ transport systems, NAD-binding component
K+ transport systems, NAD-binding component {ECO:0000313|EMBL:CBL25235.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L2_041_000G1_scaffold_55_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10382..11830
DNA (1449bp) protein (483aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PIH4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24133.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Trk-type K+ transport systems, membrane components
L2_041_000G1_scaffold_55_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12054..12857
DNA (804bp) protein (268aa)
Uncharacterized protein n=7 Tax=Clostridium difficile RepID=G6BAV2_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ27450.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
hypothetical protein
L2_041_000G1_scaffold_55_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12870..14000
DNA (1131bp) protein (377aa)
Sigma-54 interaction domain protein n=1 Tax=Clostridium difficile CD160 RepID=T3D9T4_CLODI
Sigma-54 interaction domain protein {ECO:0000313|EMBL:EQF23186.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
putative ATPase
L2_041_000G1_scaffold_55_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14008..15417
DNA (1410bp) protein (470aa)
Uncharacterized protein n=1 Tax=Clostridium difficile CD160 RepID=T3DA20_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQF23281.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
hypothetical protein
L2_041_000G1_scaffold_55_12
Terrisporobacter othiniensis, Terrisporobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15656..16735
DNA (1080bp) protein (360aa)
Rhodanese-like domain protein n=3 Tax=Clostridium sordellii RepID=T0DVE2_CLOSO
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; TaxID=1577792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Terrisporobacter.;" source="Terrisporobacter othiniensis.;"
rhodanese domain-containing protein
L2_041_000G1_scaffold_55_13
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16804..17238
DNA (435bp) protein (145aa)
Putative membrane protein n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0CLT5_CLOSO
Uncharacterised protein {ECO:0000313|EMBL:CEP81930.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
hypothetical protein
L2_041_000G1_scaffold_55_14
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17616..18800
DNA (1185bp) protein (395aa)
Putative transcriptional regulatory protein n=1 Tax=Paenibacillus alvei DSM 29 RepID=K4ZJS8_PAEAL
Helix-turn-helix domain protein {ECO:0000313|EMBL:AIY79713.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
AraC family transcriptional regulator
L2_041_000G1_scaffold_55_15
Paenibacillus alvei, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18923..20143
DNA (1221bp) protein (407aa)
hypothetical protein n=1 Tax=Paenibacillus sp. OSY-SE RepID=UPI0002FD40DC
Uncharacterized protein {ECO:0000313|EMBL:EPY09024.1}; TaxID=1117108 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus alvei TS-15.;"
putative conserved protein UCP033271
L2_041_000G1_scaffold_55_16
Paenibacillus sp. P1XP2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20179..21006
DNA (828bp) protein (276aa)
TIM-barrel signal transduction protein n=2 Tax=Paenibacillus alvei RepID=S9SY36_PAEAL
TIM-barrel signal transduction protein {ECO:0000313|EMBL:KHF32702.1}; TaxID=1472719 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. P1XP2.;"
TIM-barrel signal transduction protein
L2_041_000G1_scaffold_55_17
Terrisporobacter othiniensis, Terrisporobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21282..22127
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI00035CC92C
Membrane protein {ECO:0000313|EMBL:KHS58823.1}; TaxID=1577792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Terrisporobacter.;" source="Terrisporobacter othiniensis.;"
putative membrane protein
L2_041_000G1_scaffold_55_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22333..22755
DNA (423bp) protein (141aa)
Uncharacterized protein n=8 Tax=Clostridium difficile RepID=G6B5J5_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ32526.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
putative membrane protein
L2_041_000G1_scaffold_55_19
Clostridium autoethanogenum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22756..22962
DNA (207bp) protein (69aa)
Conserved protein with HTH domain n=2 Tax=Clostridium RepID=D8GIS5_CLOLD
transcriptional regulator, XRE family
Transcriptional regulator, XRE family {ECO:0000313|EMBL:AGY74252.1}; TaxID=1341692 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium autoethanogenum DSM 10061.;"
L2_041_000G1_scaffold_55_20
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23076..23309
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Clostridium intestinale URNW RepID=U2NQS2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGJ50730.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
hypothetical protein
L2_041_000G1_scaffold_55_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23504..24001
DNA (498bp) protein (166aa)
CarD-like/TRCF domain protein n=1 Tax=Clostridium difficile CD160 RepID=T3D8J7_CLODI
CarD-like/TRCF domain protein {ECO:0000313|EMBL:EQF23172.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
CarD family transcriptional regulator
L2_041_000G1_scaffold_55_22
Anaerofustis stercorihominis, Anaerofustis, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24337..24855)
DNA (519bp) protein (173aa)
DNA-binding helix-turn-helix protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C6G4_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDS73449.1}; TaxID=445971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Anaerofustis.;" source="Anaerofustis stercorihominis DSM 17244.;"
helix-turn-helix domain protein
L2_041_000G1_scaffold_55_23
Bacillus megaterium, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

25222..25518
DNA (297bp) protein (99aa)
Methyltransferase domain protein {ECO:0000313|EMBL:ADE68763.1}; EC=2.1.1.- {ECO:0000313|EMBL:ADE68763.1};; TaxID=545693 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus megaterium (strain ATCC 12872 / QMB1551).;"
hypothetical protein n=1 Tax=Bacillus sp. ZYK RepID=UPI0002E1F903
methyltransferase ybaJ
L2_041_000G1_scaffold_55_24
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26093..27451
DNA (1359bp) protein (453aa)
H+ symporter family protein n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0DVD8_CLOSO
Amino acid/peptide transporter {ECO:0000313|EMBL:CEP44983.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
di-/tripeptide transporter
L2_041_000G1_scaffold_55_25
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27836..29041
DNA (1206bp) protein (402aa)
two-component signal transduction sensor histidine kinase (EC:2.7.13.3)
Putative membrane protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4W6E8_CLOBI
Putative membrane protein {ECO:0000313|EMBL:EQK48661.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
L2_041_000G1_scaffold_55_26
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29065..29667
DNA (603bp) protein (201aa)
agrB1; accessory gene regulator protein B (EC:3.4.-.-)
Accessory transciptional regulator B family protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4W565_CLOBI
Accessory transciptional regulator B family protein {ECO:0000313|EMBL:EQK48733.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
L2_041_000G1_scaffold_55_27
unknown

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29651..29800
DNA (150bp) protein (50aa)

This feature has no annotations

L2_041_000G1_scaffold_55_28
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30473..31012
DNA (540bp) protein (180aa)
Putative uncharacterized protein n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RGT3_MOOTA
Uncharacterized protein {ECO:0000313|EMBL:KIE44940.1}; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense CDC 2741.;"
hypothetical protein
L2_041_000G1_scaffold_55_29
Desulfotignum balticum, Desulfotignum, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31049..31876
DNA (828bp) protein (276aa)
Periplasmic amino acid-binding protein of amino acid ABC transporter n=1 Tax=Desulfotignum balticum RepID=B2DD64_9DELT
Periplasmic amino acid-binding protein of amino acid ABC transporter {ECO:0000313|EMBL:BAG28253.1}; TaxID=115781 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfotignum.;" source="Desulfotignum balticum.;"
polar amino acid uptake ABC transporter amino acid-binding protein
L2_041_000G1_scaffold_55_30
Desulfotignum balticum, Desulfotignum, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31877..32542
DNA (666bp) protein (222aa)
amino acid ABC transporter permease n=1 Tax=Desulfospira joergensenii RepID=UPI0003B4AFDF
Permease protein of amino acid ABC transporter {ECO:0000313|EMBL:BAG28252.1}; TaxID=115781 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfotignum.;" source="Desulfotignum balticum.;"
amino acid ABC transporter permease
Displaying items 1-30 of 150 in total

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