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L2_041_000G1_scaffold_234

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_041_000G1_scaffold_234_1
Salpingoeca rosetta, Salpingoeca, Choanoflagellida, Eukaryota

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comp(3..629)
DNA (627bp) protein (209aa)
Putative uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) RepID=F2ULW4_SALR5
Putative uncharacterized protein {ECO:0000313|EMBL:EGD78113.1}; TaxID=946362 species="Eukaryota; Choanoflagellida; Salpingoecidae; Salpingoeca.;" source="Salpingoeca rosetta (strain ATCC 50818 / BSB-021).;"
RBAM_007770; collagen like triple helix with GXT repeats
L2_041_000G1_scaffold_234_2
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(835..1440)
DNA (606bp) protein (202aa)
Nitroreductase n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1TG98_9CLOT
Nitroreductase {ECO:0000313|EMBL:EGD46463.1}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
nitroreductase family protein
L2_041_000G1_scaffold_234_3
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1571..2068)
DNA (498bp) protein (166aa)
Putative G/U mismatch-specific DNA glycosylase n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GDE3_EUBLK
putative G/U mismatch-specific DNA glycosylase
Putative G/U mismatch-specific DNA glycosylase {ECO:0000313|EMBL:ADO36748.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L2_041_000G1_scaffold_234_4
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2159..4546)
DNA (2388bp) protein (796aa)
HAD ATPase, P-type, IC family protein {ECO:0000313|EMBL:EQK39844.1}; EC=3.6.3.- {ECO:0000313|EMBL:EQK39844.1};; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
ATPase, P-type (transporting), HAD super, subIC family protein (EC:3.6.3.-)
HAD ATPase, P-type, IC family protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4V7Z2_CLOBI
L2_041_000G1_scaffold_234_5
Gilliamella apicola, Gilliamella, Orbales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4938..5573)
DNA (636bp) protein (212aa)
NAD dependent epimerase/dehydratase family protein n=3 Tax=Fusobacterium nucleatum RepID=C3WWA7_FUSNU
Rrf2-linked NADH-flavin reductase
Rrf2-linked NADH-flavin reductase {ECO:0000313|EMBL:AHN27189.1}; TaxID=1196095 species="Bacteria; Proteobacteria; Gammaproteobacteria; Orbales; Orbaceae; Gilliamella.;" source="Gilliamella apicola.;"
L2_041_000G1_scaffold_234_6
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5882..6226
DNA (345bp) protein (115aa)
Putative HTH-type transcriptional regulator YdeP n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MHQ4_9CLOT
ydeP; putative HTH-type transcriptional regulator YdeP
Putative HTH-type transcriptional regulator YdeP {ECO:0000313|EMBL:AGF55838.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L2_041_000G1_scaffold_234_7
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6289..6768)
DNA (480bp) protein (160aa)
Acetyltransferase, GNAT family n=2 Tax=Clostridium RepID=A7VRH5_9CLOT
Acetyltransferase GNAT family {ECO:0000313|EMBL:CDC04529.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
Acetyltransferase (GNAT) family.
L2_041_000G1_scaffold_234_8
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6954..7619)
DNA (666bp) protein (222aa)
Predicted membrane protein n=1 Tax=Paenibacillus polymyxa (strain E681) RepID=E0RLZ5_PAEP6
Membrane protein {ECO:0000313|EMBL:KGK90788.1}; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HMP27.;"
membrane protein
L2_041_000G1_scaffold_234_9
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7729..8229)
DNA (501bp) protein (167aa)
Cystathionine beta-lyase PatB {ECO:0000313|EMBL:KIE44895.1}; EC=4.4.1.8 {ECO:0000313|EMBL:KIE44895.1};; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense CDC 2741.;"
class-II aminotransferase (EC:4.4.1.8)
Aminotransferase, class I/II n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LE07_9FIRM
L2_041_000G1_scaffold_234_10
Sebaldella termitidis, Sebaldella, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(8620..9078)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Sebaldella termitidis (strain ATCC 33386 / NCTC 11300) RepID=D1ARV3_SEBTE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ10589.1}; TaxID=526218 species="Bacteria; Fusobacteria; Fusobacteriales; Leptotrichiaceae; Sebaldella.;" source="Sebaldella termitidis (strain ATCC 33386 / NCTC 11300).;"
L2_041_000G1_scaffold_234_11
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9199..9816)
DNA (618bp) protein (206aa)
flavodoxin n=1 Tax=Clostridium sp. JC122 RepID=UPI000288A90B
Flavodoxin {ECO:0000313|EMBL:KJU71660.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
flavodoxin domain protein
L2_041_000G1_scaffold_234_12
Enterococcus caccae, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(9956..10603)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Enterococcus caccae ATCC BAA-1240 RepID=R3WI57_9ENTE
Uncharacterized protein {ECO:0000313|EMBL:EOL47127.1}; TaxID=1158612 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus caccae ATCC BAA-1240.;"
DSBA oxidoreductase
L2_041_000G1_scaffold_234_13
unknown

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11116..11277
DNA (162bp) protein (54aa)
hypothetical protein
L2_041_000G1_scaffold_234_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11373..13046)
DNA (1674bp) protein (558aa)
Peptidase, S8/S53 family n=6 Tax=Clostridium difficile RepID=D5Q357_CLODI
Subtilisin-like serine germination related protease {ECO:0000313|EMBL:CCK87562.1}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
cspC; subtilisin-like serine germination related protease
L2_041_000G1_scaffold_234_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13056..14747)
DNA (1692bp) protein (564aa)
Subtilisin-like serine germination related protease n=1 Tax=Clostridium difficile E16 RepID=U3WGD1_CLODI
cspBA; germination-specific protease
Subtilisin-like serine germination related protease {ECO:0000313|EMBL:CCL30468.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_041_000G1_scaffold_234_16
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15245..15733
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z794_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ83197.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
L2_041_000G1_scaffold_234_17
Bacillus amyloliquefaciens, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(15881..16420)
DNA (540bp) protein (180aa)
Uncharacterized protein n=2 Tax=Bacillus RepID=R9TS82_BACLI
hypothetical protein
TetR family transcriptional regulator {ECO:0000313|EMBL:KJD56089.1}; TaxID=1390 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus amyloliquefaciens (Bacillus velezensis).;"
L2_041_000G1_scaffold_234_18
Terrisporobacter othiniensis, Terrisporobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16584..17333
DNA (750bp) protein (250aa)
4Fe-4S binding domain protein n=1 Tax=Clostridium difficile CD160 RepID=T3D6Z6_CLODI
Flavodoxin {ECO:0000313|EMBL:KHS58582.1}; TaxID=1577792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Terrisporobacter.;" source="Terrisporobacter othiniensis.;"
flavodoxin/nitric oxide synthase
L2_041_000G1_scaffold_234_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17369..18196)
DNA (828bp) protein (276aa)
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CCK96217.1}; EC=3.5.1.28 {ECO:0000313|EMBL:CCK96217.1};; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
N-acetylmuramoyl-L-alanine amidase family protein n=12 Tax=Clostridium difficile RepID=T2ZN67_CLODI
n-acetylmuramoyl-l-alanine amidase
L2_041_000G1_scaffold_234_20
unknown

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comp(18788..18988)
DNA (201bp) protein (67aa)

This feature has no annotations

L2_041_000G1_scaffold_234_21
unknown

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comp(18995..19219)
DNA (225bp) protein (75aa)

This feature has no annotations

L2_041_000G1_scaffold_234_22
unknown

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comp(19853..20095)
DNA (243bp) protein (81aa)

This feature has no annotations

L2_041_000G1_scaffold_234_23
unknown

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20259..20474
DNA (216bp) protein (72aa)

This feature has no annotations

L2_041_000G1_scaffold_234_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20870..21106)
DNA (237bp) protein (79aa)
Uncharacterized protein n=35 Tax=Clostridium difficile RepID=U4BTA0_CLODI
Putative membrane protein {ECO:0000313|EMBL:EQG74589.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_041_000G1_scaffold_234_25
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21316..22794)
DNA (1479bp) protein (493aa)
Drug resistance ABC transporter, RA2 family, ATP-binding protein n=2 Tax=Clostridium botulinum A RepID=A5I5U4_CLOBH
drug resistance ABC transporter ATP-binding protein
ABC transporter family protein {ECO:0000313|EMBL:KIE47749.1}; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense CDC 2741.;"
L2_041_000G1_scaffold_234_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23068..24426)
DNA (1359bp) protein (453aa)
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:EFH15108.1}; EC=2.1.1.- {ECO:0000313|EMBL:EFH15108.1};; TaxID=525258 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP07.;"
23S rRNA (Uracil-5-)-methyltransferase RumA n=6 Tax=Clostridium difficile RepID=D5Q7C2_CLODI
RNA methyltransferase
L2_041_000G1_scaffold_234_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24645..26405)
DNA (1761bp) protein (587aa)
pyk; Pyruvate kinase (PK) (EC:2.7.1.40)
Pyruvate kinase (PK) {ECO:0000313|EMBL:CAJ70297.1}; EC=2.7.1.40 {ECO:0000313|EMBL:CAJ70297.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Pyruvate kinase n=1 Tax=Clostridium difficile CD69 RepID=T2ZZB9_CLODI
L2_041_000G1_scaffold_234_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26460..27506)
DNA (1047bp) protein (349aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
6-phosphofructokinase n=6 Tax=Clostridium difficile RepID=D5Q7C0_CLODI
6-phosphofructokinase
L2_041_000G1_scaffold_234_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27572..31138)
DNA (3567bp) protein (1189aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
DNA polymerase III, alpha subunit n=1 Tax=Clostridium difficile CD69 RepID=T2ZW30_CLODI
dnaE; DNA polymerase III DnaE
L2_041_000G1_scaffold_234_30
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31216..31767)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Clostridium difficile CD160 RepID=T3D6T6_CLODI
Protein of uncharacterised function (DUF523) {ECO:0000313|EMBL:CEN79967.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
hypothetical protein
Displaying items 1-30 of 55 in total

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