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L2_041_000G1_scaffold_354

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_041_000G1_scaffold_354_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..462)
DNA (462bp) protein (154aa)
Subtilase family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DCN1_CLODI
Subtilase family protein {ECO:0000313|EMBL:EQF24171.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
cspBA; germination-specific protease
L2_041_000G1_scaffold_354_2
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

789..1886
DNA (1098bp) protein (366aa)
Ribosome-binding ATPase YchF n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VWT6_CLOBI
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
GTP-binding protein YchF
L2_041_000G1_scaffold_354_3
Peptostreptococcus stomatis, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2054..3613)
DNA (1560bp) protein (520aa)
N-acetylglucosaminylphosphatidylinositol deacetylase n=1 Tax=Peptostreptococcus stomatis DSM 17678 RepID=E0E1P1_9FIRM
N-acetylglucosaminylphosphatidylinositol deacetylase {ECO:0000313|EMBL:EFM65166.1}; TaxID=596315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptostreptococcus.;" source="Peptostreptococcus stomatis DSM 17678.;"
glycoside hydrolase family 18
L2_041_000G1_scaffold_354_4
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4054..4254
DNA (201bp) protein (67aa)
Ferritin-like domain protein n=1 Tax=Clostridium difficile CD127 RepID=T4YV36_CLODI
Bacterioferritin {ECO:0000313|EMBL:CEN76221.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
bacterioferritin
L2_041_000G1_scaffold_354_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4390..5844)
DNA (1455bp) protein (485aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
murE; UDP-N-acetylmuramyl-tripeptide synthetase (EC:6.3.2.13)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Clostridium difficile CD160 RepID=T3D8H9_CLODI
L2_041_000G1_scaffold_354_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6038..6913
DNA (876bp) protein (292aa)
Bacterial regulatory helix-turn-helix s, AraC family protein n=2 Tax=Clostridium difficile RepID=T4PHJ2_CLODI
Transcriptional regulator, AraC family {ECO:0000313|EMBL:CCL30902.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
AraC family transcriptional regulator
L2_041_000G1_scaffold_354_7
Lactobacillus farraginis, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7014..7463
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Enterococcus malodoratus ATCC 43197 RepID=R2RRB6_9ENTE
Transcriptional regulator {ECO:0000313|EMBL:GAF35550.1}; TaxID=1423743 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus farraginis DSM 18382 = JCM 14108.;"
Transcriptional regulator
L2_041_000G1_scaffold_354_8
Vagococcus lutrae, Vagococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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7523..8080
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Vagococcus lutrae LBD1 RepID=V6Q762_9ENTE
Uncharacterized protein {ECO:0000313|EMBL:EST90510.1}; TaxID=1408226 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Vagococcus.;" source="Vagococcus lutrae LBD1.;"
N-acetyltransferase GCN5
L2_041_000G1_scaffold_354_9
Enterococcus haemoperoxidus, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8618..9400)
DNA (783bp) protein (261aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1158608 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus haemoperoxidus ATCC BAA-382.;"
proC; pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase n=1 Tax=Enterococcus haemoperoxidus ATCC BAA-382 RepID=R2SX66_9ENTE
L2_041_000G1_scaffold_354_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9547..13101)
DNA (3555bp) protein (1185aa)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159};; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
Pyruvate-ferredoxin oxidoreductase n=1 Tax=Clostridium difficile E10 RepID=U3VC54_CLODI
nifJ; pyruvate-flavodoxin oxidoreductase
L2_041_000G1_scaffold_354_11
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13411..13980)
DNA (570bp) protein (190aa)
Phosphate propanoyltransferase {ECO:0000256|PIRNR:PIRNR010130}; EC=2.3.1.222 {ECO:0000256|PIRNR:PIRNR010130};; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
Phosphate propanoyltransferase n=1 Tax=Clostridium difficile P59 RepID=T4SGY3_CLODI
propanediol utilization protein
L2_041_000G1_scaffold_354_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14371..16125)
DNA (1755bp) protein (585aa)
Putative sporulation stage II, protein E n=1 Tax=Clostridium difficile E10 RepID=U3VA62_CLODI
Putative sporulation stage II, protein E {ECO:0000313|EMBL:CCK99160.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
putative sporulation stage II, protein E
L2_041_000G1_scaffold_354_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16168..16629)
DNA (462bp) protein (154aa)
Uncharacterized protein n=188 Tax=Clostridium difficile RepID=T3GAT0_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQG75335.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_041_000G1_scaffold_354_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16819..17283
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Clostridium difficile CD160 RepID=T3D8U4_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQF23908.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
conserved hypothetical protein
L2_041_000G1_scaffold_354_15
Clostridium sporogenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17434..18294)
DNA (861bp) protein (287aa)
methylcobalamin:coenzyme M methyltransferase (EC:2.1.1.-)
uroporphyrinogen decarboxylase n=1 Tax=Clostridium sp. JC122 RepID=UPI000288CEAB
Putative methylcobalamin:coenzyme M methyltransferase {ECO:0000313|EMBL:EHN16296.1}; TaxID=1075091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sporogenes PA 3679.;"
L2_041_000G1_scaffold_354_16
Methanococcus maripaludis, Methanococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

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comp(18423..19073)
DNA (651bp) protein (217aa)
Coenzyme B12-binding:Cobalamin-dependent methionine synthase, B12-binding n=1 Tax=Methanococcus maripaludis (strain S2 / LL) RepID=Q6LY42_METMP
mtbC; coenzyme B12-binding:cobalamin-dependent methionine synthase, B12-binding
Coenzyme B12-binding:Cobalamin-dependent methionine synthase, B12-binding {ECO:0000313|EMBL:CAF30707.1}; TaxID=267377 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus.;" source="Methanococcus maripaludis (strain S2 / LL).;"
L2_041_000G1_scaffold_354_17
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19092..19997)
DNA (906bp) protein (302aa)
CobW/P47K family protein n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AZF9_CLOA9
CobW/P47K family protein
CobW/P47K family protein {ECO:0000313|EMBL:AFS78172.1}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;"
L2_041_000G1_scaffold_354_18
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20041..21150)
DNA (1110bp) protein (370aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KND3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN34050.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
Uroporphyrinogen decarboxylase (URO-D)
L2_041_000G1_scaffold_354_19
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21243..22361)
DNA (1119bp) protein (373aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KND3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN34050.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
uroporphyrinogen-III decarboxylase
L2_041_000G1_scaffold_354_20
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

Not on your lists

22758..23753
DNA (996bp) protein (332aa)
Putative uncharacterized protein id=3085941 bin=GWF2_Clostridiales_36_10 species=Clostridium phytofermentans genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
spore photoproduct lyase
Tax=GWF2_Clostridiales_36_10_curated
L2_041_000G1_scaffold_354_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23802..23972)
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Clostridium difficile CD160 RepID=T3DBV8_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQF23926.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
hypothetical protein
L2_041_000G1_scaffold_354_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24238..24459)
DNA (222bp) protein (74aa)
Small acid-soluble spore protein A n=215 Tax=Clostridium difficile RepID=C9XN58_CLODC
sspA; small, acid-soluble spore protein alpha
Small, acid-soluble spore protein alpha {ECO:0000313|EMBL:EHJ32839.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_041_000G1_scaffold_354_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24639..25865)
DNA (1227bp) protein (409aa)
Flavo, HI0933 family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DAZ9_CLODI
Flavo, HI0933 family protein {ECO:0000313|EMBL:EQF23725.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
lipoprotein
L2_041_000G1_scaffold_354_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25880..26824)
DNA (945bp) protein (315aa)
PAP2 superfamily protein n=10 Tax=Clostridium difficile RepID=T2XFA5_CLODI
putative membrane-associated phosphatase
Membrane-associated phosphatase {ECO:0000313|EMBL:CKH41597.1}; Putative membrane-associated phosphatase {ECO:0000313|EMBL:CEJ99315.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_041_000G1_scaffold_354_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26921..27445)
DNA (525bp) protein (175aa)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:CCK99167.1}; EC=2.4.2.8 {ECO:0000313|EMBL:CCK99167.1};; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
Hypoxanthine phosphoribosyltransferase n=216 Tax=Clostridium difficile RepID=Q183C4_CLOD6
hpt; phosphoribosyltransferase
L2_041_000G1_scaffold_354_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27621..28694
DNA (1074bp) protein (358aa)
Aminotransferase class I and II family protein n=1 Tax=Clostridium difficile CD160 RepID=T3D8E7_CLODI
Aminotransferase class I and II family protein {ECO:0000313|EMBL:EQF23763.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
aminotransferase
L2_041_000G1_scaffold_354_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28941..30155)
DNA (1215bp) protein (405aa)
Dicarboxylate symporter family protein n=1 Tax=Clostridium difficile DA00211 RepID=T3UED9_CLODI
sodium:dicarboxylate symporter
Sodium:dicarboxylate symporter {ECO:0000313|EMBL:CKH41707.1}; Sodium:dicarboxylate symporter family protein {ECO:0000313|EMBL:CEJ99318.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_041_000G1_scaffold_354_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30474..30863)
DNA (390bp) protein (130aa)
Uncharacterized protein n=11 Tax=Clostridium difficile RepID=T3P1S8_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL30962.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_041_000G1_scaffold_354_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30944..31942)
DNA (999bp) protein (333aa)
Aspartate--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088413}; EC=6.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088403};; Asparagine synthetase A {ECO:0000256|HAMAP-Rule:MF_00555}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
asnA; Aspartate--ammonia ligase (Asparagine synthetaseA) (EC:6.3.1.1)
Aspartate--ammonia ligase n=1 Tax=Clostridium difficile CD69 RepID=T3A050_CLODI
L2_041_000G1_scaffold_354_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32370..33566)
DNA (1197bp) protein (399aa)
Aminotransferase {ECO:0000313|EMBL:CKH41807.1}; EC=4.4.1.8 {ECO:0000313|EMBL:CKH41807.1};; Cystathionine beta-lyase PatB {ECO:0000313|EMBL:CDS88836.1}; EC=4.4.1.8 {ECO:0000313|EMBL:CDS88836.1};; Putative pyridoxal phosphate-dependent transferase {ECO:0000313|EMBL:CDS88289.1}; Putative pyridoxal phosphate-dependenttransferase {ECO:0000313|EMBL:CEJ99321.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
C-S lyase family protein n=1 Tax=Clostridium difficile DA00142 RepID=T3P1Q7_CLODI
pyridoxal phosphate-dependent transferase
Displaying items 1-30 of 41 in total

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