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L2_041_000G1_scaffold_1058

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_041_000G1_scaffold_1058_1
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..336)
DNA (336bp) protein (112aa)
Bacterial capsule synthesis PGA_cap family protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4W6J5_CLOBI
Bacterial capsule synthesis PGA_cap family protein {ECO:0000313|EMBL:EQK48711.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
lipoprotein
L2_041_000G1_scaffold_1058_2
unknown

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comp(279..431)
DNA (153bp) protein (51aa)

This feature has no annotations

L2_041_000G1_scaffold_1058_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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661..921
DNA (261bp) protein (87aa)
Rhodanese-like protein n=6 Tax=Clostridium difficile RepID=D5Q6C3_CLODI
Rhodanese-like protein {ECO:0000313|EMBL:EFH06598.1}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP08.;"
rhodanese-like domain-containing protein
L2_041_000G1_scaffold_1058_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1107..1817
DNA (711bp) protein (237aa)
Bacterial regulatory s, crp family protein n=2 Tax=Clostridium difficile RepID=T3A316_CLODI
cAMP-binding regulatory protein
Transcriptional regulator, Crp family {ECO:0000313|EMBL:CCL30454.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_041_000G1_scaffold_1058_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2012..3019
DNA (1008bp) protein (336aa)
Anaerobic sulfite reductase subunit A (Anaerobic sulfite reductase iron-sulfur subunit) {ECO:0000313|EMBL:CCK87548.1}; EC=1.12.2.1 {ECO:0000313|EMBL:CCK87548.1};; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
asrA; Anaerobic sulfite reductase subunit A (Anaerobicsulfite reductase iron-sulfur subunit) (EC:1.12.2.1)
Sulfite reductase, subunit A n=6 Tax=Clostridium difficile RepID=D5Q371_CLODI
L2_041_000G1_scaffold_1058_6
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3021..3815
DNA (795bp) protein (265aa)
Sulfite reductase, subunit B {ECO:0000313|EMBL:EQK45305.1}; EC=1.8.-.- {ECO:0000313|EMBL:EQK45305.1};; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
Sulfite reductase, subunit B n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VW08_CLOBI
asrB; Anaerobic sulfite reductase subunit B
L2_041_000G1_scaffold_1058_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3827..4795
DNA (969bp) protein (323aa)
Sulfite reductase, subunit C {ECO:0000313|EMBL:EQF24042.1}; EC=1.8.-.- {ECO:0000313|EMBL:EQF24042.1};; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
Sulfite reductase, subunit C n=1 Tax=Clostridium difficile CD160 RepID=T3DB23_CLODI
asrC; anaerobic sulfite reductase subunit C
L2_041_000G1_scaffold_1058_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4997..5872
DNA (876bp) protein (292aa)
Alpha/beta hydrolase family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DC16_CLODI
Alpha/beta hydrolase family protein {ECO:0000313|EMBL:EQF24090.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
hypothetical protein
L2_041_000G1_scaffold_1058_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5948..6511
DNA (564bp) protein (188aa)
Carbonic anhydrase family protein n=1 Tax=Clostridium difficile CD160 RepID=T3D9V4_CLODI
Carbonic anhydrase family protein {ECO:0000313|EMBL:EQF24283.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
carbonic anhydrase
L2_041_000G1_scaffold_1058_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6733..7197
DNA (465bp) protein (155aa)
Transcriptional regulator, MarR family n=6 Tax=Clostridium difficile RepID=D5Q385_CLODI
Transcriptional regulator, MarR family {ECO:0000313|EMBL:CCK94670.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
MarR family transcriptional regulator
L2_041_000G1_scaffold_1058_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7279..9621
DNA (2343bp) protein (781aa)
ABC transporter, ATP-binding protein n=9 Tax=Clostridium difficile RepID=G6BC22_CLODI
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EHJ25694.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
ABC transporter ATP-binding protein/permease
L2_041_000G1_scaffold_1058_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9614..11464
DNA (1851bp) protein (617aa)
ABC-type transport system, multidrug-family ATP-binding/permease {ECO:0000313|EMBL:CCK98629.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCK98629.1};; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
ABC-type transport system, multidrug-family ATP-binding/permease n=1 Tax=Clostridium difficile E10 RepID=U3VAF5_CLODI
ABC transporter ATP-binding/permease protein
L2_041_000G1_scaffold_1058_13
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11753..12604
DNA (852bp) protein (284aa)
Bacterial regulatory helix-turn-helix s, AraC family protein n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0CTP4_CLOSO
AraC family transcriptional regulator {ECO:0000313|EMBL:CEN92983.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
AraC family transcriptional regulator
L2_041_000G1_scaffold_1058_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12757..13920
DNA (1164bp) protein (388aa)
Putative membrane protein n=2 Tax=Clostridium difficile RepID=U3WCJ8_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCL22512.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_041_000G1_scaffold_1058_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14122..14760
DNA (639bp) protein (213aa)
Response regulator receiver domain protein n=6 Tax=Clostridium difficile RepID=D5Q0A1_CLODI
DNA-binding response regulator {ECO:0000313|EMBL:CCK96274.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
DNA-binding response regulator
L2_041_000G1_scaffold_1058_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14988..16175
DNA (1188bp) protein (396aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
HAMP domain protein n=1 Tax=Clostridium difficile CD160 RepID=T3DHS9_CLODI
Two component system histidine kinase
L2_041_000G1_scaffold_1058_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16383..17282
DNA (900bp) protein (300aa)
Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=7 Tax=Clostridium difficile RepID=G6BC47_CLODI
Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase {ECO:0000313|EMBL:EHJ26800.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
putative phage-related cell wall hydrolase
L2_041_000G1_scaffold_1058_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17454..17816
DNA (363bp) protein (121aa)
Glycosyl hydrolases related to GH101 family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DCV3_CLODI
Glycosyl hydrolases related to GH101 family protein {ECO:0000313|EMBL:EQF24256.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
lipoprotein
L2_041_000G1_scaffold_1058_19
unknown

Not on your lists

17855..18205
DNA (351bp) protein (117aa)

This feature has no annotations

L2_041_000G1_scaffold_1058_20
Sebaldella termitidis, Sebaldella, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

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18502..19383
DNA (882bp) protein (294aa)
Streptomycin adenylyltransferase n=1 Tax=Sebaldella termitidis (strain ATCC 33386 / NCTC 11300) RepID=D1API7_SEBTE
streptomycin adenylyltransferase
Streptomycin adenylyltransferase {ECO:0000313|EMBL:ACZ10021.1}; TaxID=526218 species="Bacteria; Fusobacteria; Fusobacteriales; Leptotrichiaceae; Sebaldella.;" source="Sebaldella termitidis (strain ATCC 33386 / NCTC 11300).;"
L2_041_000G1_scaffold_1058_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20060..20293
DNA (234bp) protein (78aa)
Hemolysin XhlA family protein n=9 Tax=Clostridium difficile RepID=T2U345_CLODI
Hemolysin XhlA family protein {ECO:0000313|EMBL:EQI88082.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
hypothetical protein
L2_041_000G1_scaffold_1058_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20307..20483
DNA (177bp) protein (59aa)
Putative membrane protein n=2 Tax=Clostridium difficile RepID=T3DAY7_CLODI
Putative membrane protein {ECO:0000313|EMBL:EQF24658.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
putative holin
L2_041_000G1_scaffold_1058_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20561..21427
DNA (867bp) protein (289aa)
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CCL00223.1}; EC=3.5.1.28 {ECO:0000313|EMBL:CCL00223.1};; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
N-acetylmuramoyl-L-alanine amidase family protein n=12 Tax=Clostridium difficile RepID=T2ZN67_CLODI
n-acetylmuramoyl-l-alanine amidase
L2_041_000G1_scaffold_1058_24
Terrisporobacter othiniensis, Terrisporobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21488..21955)
DNA (468bp) protein (156aa)
Rubrerythrin family protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4V7D1_CLOBI
Uncharacterized protein {ECO:0000313|EMBL:KHS57468.1}; TaxID=1577792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Terrisporobacter.;" source="Terrisporobacter othiniensis.;"
rubrerythrin
Displaying 24 items

View Taxonomy