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L2_041_000G1_scaffold_702

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_041_000G1_scaffold_702_1
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..324
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDP9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46945.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rbr1; rubrerythrin
L2_041_000G1_scaffold_702_2
unknown

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436..1038
DNA (603bp) protein (201aa)

This feature has no annotations

L2_041_000G1_scaffold_702_3
unknown

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comp(1091..1843)
DNA (753bp) protein (251aa)

This feature has no annotations

L2_041_000G1_scaffold_702_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1994..2512)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=T5RUT5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQN60295.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_041_000G1_scaffold_702_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2542..3813)
DNA (1272bp) protein (424aa)
Putative competence-damage inducible protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAC7_9FIRM
Putative competence-damage inducible protein {ECO:0000256|HAMAP-Rule:MF_00226}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative competence-damage inducible protein
L2_041_000G1_scaffold_702_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3852..4418)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQG1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75051.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_041_000G1_scaffold_702_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4517..7543)
DNA (3027bp) protein (1009aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBV2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47830.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_041_000G1_scaffold_702_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7895..9067)
DNA (1173bp) protein (391aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Probable tRNA sulfurtransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAC8_9FIRM
thiI; putative thiamine biosynthesis protein ThiI
L2_041_000G1_scaffold_702_9
unknown

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comp(9129..9410)
DNA (282bp) protein (94aa)

This feature has no annotations

L2_041_000G1_scaffold_702_10
unknown

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comp(9833..10336)
DNA (504bp) protein (168aa)

This feature has no annotations

L2_041_000G1_scaffold_702_11
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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10380..10559
DNA (180bp) protein (60aa)
hypothetical protein n=1 Tax=Clostridiales bacterium NK3B98 RepID=UPI0003B680FF
Uncharacterized protein {ECO:0000313|EMBL:CDB29994.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
hypothetical protein
L2_041_000G1_scaffold_702_12
Ruminococcus sp. CAG:254, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10606..11223)
DNA (618bp) protein (206aa)
NADPH-dependent FMN reductase n=1 Tax=Ruminococcus sp. CAG:254 RepID=R5VUA5_9FIRM
NADPH-dependent FMN reductase {ECO:0000313|EMBL:CCZ84097.1}; TaxID=1262953 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:254.;"
Multimeric flavodoxin WrbA
L2_041_000G1_scaffold_702_13
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11331..11945)
DNA (615bp) protein (205aa)
ABC transporter, ATP-binding protein n=2 Tax=Oscillibacter RepID=U2S1B1_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERK56602.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
ABC transporter
L2_041_000G1_scaffold_702_14
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11942..12880)
DNA (939bp) protein (313aa)
Putative oligopeptide ABC transporter, ATP-binding protein OppD n=2 Tax=Oscillibacter RepID=U2RST6_9FIRM
Putative oligopeptide ABC transporter, ATP-binding protein OppD {ECO:0000313|EMBL:ERK56603.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
ABC transporter
L2_041_000G1_scaffold_702_15
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13790..14611)
DNA (822bp) protein (274aa)
ABC transporter, permease protein n=2 Tax=Oscillibacter RepID=U2QK77_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:ERK56604.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
binding-protein-dependent transport systems inner membrane component
L2_041_000G1_scaffold_702_16
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14608..15600)
DNA (993bp) protein (331aa)
Putative oligopeptide ABC transporter, permease protein AppB n=2 Tax=Oscillibacter RepID=U2Q1I0_9FIRM
Putative oligopeptide ABC transporter, permease protein AppB {ECO:0000313|EMBL:ERK56605.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
L2_041_000G1_scaffold_702_17
unknown

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15713..15898
DNA (186bp) protein (62aa)

This feature has no annotations

L2_041_000G1_scaffold_702_18
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16313..17929)
DNA (1617bp) protein (539aa)
ABC transporter, substrate-binding protein, family 5 n=2 Tax=Oscillibacter RepID=U2QJE1_9FIRM
ABC transporter, substrate-binding protein, family 5 {ECO:0000313|EMBL:ERK56606.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
ABC-type dipeptide transport system, periplasmic component
L2_041_000G1_scaffold_702_19
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17947..19224)
DNA (1278bp) protein (426aa)
UPF0272 protein HMPREF1546_04175 n=2 Tax=Oscillibacter RepID=U2S1B5_9FIRM
UPF0272 protein HMPREF1546_04175 {ECO:0000256|HAMAP-Rule:MF_01074}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L2_041_000G1_scaffold_702_20
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19226..19987)
DNA (762bp) protein (254aa)
phosphoribosylaminoimidazole carboxylase (EC:4.1.1.21)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2RSU1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK56608.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
L2_041_000G1_scaffold_702_21
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20003..20758)
DNA (756bp) protein (252aa)
TIGR00268 family protein n=2 Tax=Oscillibacter RepID=U2QK82_9FIRM
TIGR00268 family protein {ECO:0000313|EMBL:ERK56609.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
ATP-utilizing enzymes of the PP-loop superfamily
L2_041_000G1_scaffold_702_22
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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comp(21011..22393)
DNA (1383bp) protein (461aa)
NAD-dependent aldehyde dehydrogenases (EC:1.2.1.3 1.2.1.5)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZDL5_9FIRM
Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
L2_041_000G1_scaffold_702_23
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22506..22793
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BZD9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG74517.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
hypothetical protein
L2_041_000G1_scaffold_702_24
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22837..23505)
DNA (669bp) protein (223aa)
Putative transcription activator (EC:3.5.99.2)
TENA/THI-4 family protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TNM9_9FIRM
TENA/THI-4 family protein {ECO:0000313|EMBL:CDC69491.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
L2_041_000G1_scaffold_702_25
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23502..24113)
DNA (612bp) protein (204aa)
Putative membrane protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6UFH4_9FIRM
Putative membrane protein {ECO:0000313|EMBL:CDC69502.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
thiamine transporter protein
L2_041_000G1_scaffold_702_26
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24110..24907)
DNA (798bp) protein (266aa)
phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9Q8_9FIRM
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:EGJ47086.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_041_000G1_scaffold_702_27
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25796..26449)
DNA (654bp) protein (218aa)
HAD hydrolase, family IA, variant 3 n=2 Tax=Oscillibacter RepID=U2RUR6_9FIRM
HAD hydrolase, family IA, variant 3 {ECO:0000313|EMBL:ERK59243.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
L2_041_000G1_scaffold_702_28
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26446..27087)
DNA (642bp) protein (214aa)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
thiamine-phosphate diphosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase n=1 Tax=Clostridium sp. CAG:242 RepID=R6CJ85_9CLOT
L2_041_000G1_scaffold_702_29
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27074..27895)
DNA (822bp) protein (274aa)
Hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030}; EC=2.7.1.50 {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030};; 4-methyl-5-beta-hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
Hydroxyethylthiazole kinase, sugar kinase family (EC:2.7.1.50)
Hydroxyethylthiazole kinase n=1 Tax=Clostridium sp. CAG:242 RepID=R6CSC9_9CLOT
L2_041_000G1_scaffold_702_30
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29258..30946)
DNA (1689bp) protein (563aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
pheT; phenylalanyl-tRNA synthetase beta chain (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YNC7_9FIRM
Displaying 30 items

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