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L2_041_000G1_scaffold_721

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_041_000G1_scaffold_721_1
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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209..1300
DNA (1092bp) protein (364aa)
asd; aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9A6_9FIRM
Aspartate-semialdehyde dehydrogenase {ECO:0000313|EMBL:EGJ48075.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_041_000G1_scaffold_721_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1385..2272
DNA (888bp) protein (296aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086366}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9A7_9FIRM
dihydrodipicolinate synthase
L2_041_000G1_scaffold_721_3
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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2305..3060
DNA (756bp) protein (252aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
dapB; 4-hydroxy-tetrahydrodipicolinate reductase (EC:1.17.1.-)
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9A8_9FIRM
L2_041_000G1_scaffold_721_4
unknown

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comp(3153..3284)
DNA (132bp) protein (44aa)

This feature has no annotations

L2_041_000G1_scaffold_721_5
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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comp(3298..3471)
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6H1P2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB30680.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
L2_041_000G1_scaffold_721_6
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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3654..3998
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6UDL0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC68887.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
putative PadR family transcriptional regulator
L2_041_000G1_scaffold_721_7
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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4041..4943
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NRR7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDN01327.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L2_041_000G1_scaffold_721_8
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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4986..5897
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NRR7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDN01327.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L2_041_000G1_scaffold_721_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5984..8014)
DNA (2031bp) protein (677aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XHE7_9FIRM
hypothetical protein
L2_041_000G1_scaffold_721_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8015..8710)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XHE8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45434.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
response regulator
L2_041_000G1_scaffold_721_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8994..10442
DNA (1449bp) protein (483aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDS4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46970.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
arginine utilization regulatory protein RocR
L2_041_000G1_scaffold_721_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10716..12332
DNA (1617bp) protein (539aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDS5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46971.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
amidohydrolase
L2_041_000G1_scaffold_721_13
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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12329..13672
DNA (1344bp) protein (448aa)
Branched-chain amino acid transport system II carrier protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TLD5_9FIRM
Branched-chain amino acid transport system II carrier protein {ECO:0000313|EMBL:CDC70534.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
branched-chain amino acid ABC transporter substrate-binding protein
L2_041_000G1_scaffold_721_14
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13783..15003
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDS6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46972.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
peptidase M20
L2_041_000G1_scaffold_721_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15079..16491
DNA (1413bp) protein (471aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDS7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46973.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_041_000G1_scaffold_721_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16822..17757)
DNA (936bp) protein (312aa)
Transcriptional regulator, AraC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSG9_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EFB74349.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_041_000G1_scaffold_721_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17954..19093
DNA (1140bp) protein (380aa)
Oxidoreductase, NAD-binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSG8_9FIRM
Oxidoreductase, NAD-binding domain protein {ECO:0000313|EMBL:EFB74348.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
dehydrogenase
L2_041_000G1_scaffold_721_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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19139..20140
DNA (1002bp) protein (334aa)
AP endonuclease, family 2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSG7_9FIRM
AP endonuclease, family 2 {ECO:0000313|EMBL:EFB74347.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
xylose isomerase domain-containing protein
L2_041_000G1_scaffold_721_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20180..21214
DNA (1035bp) protein (345aa)
Xylose isomerase {ECO:0000256|RuleBase:RU000609, ECO:0000256|SAAS:SAAS00108511}; EC=5.3.1.5 {ECO:0000256|RuleBase:RU000609, ECO:0000256|SAAS:SAAS00108511};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Xylose isomerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSG6_9FIRM
xylose isomerase
L2_041_000G1_scaffold_721_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21236..22069
DNA (834bp) protein (278aa)
Ketose-bisphosphate aldolase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSG5_9FIRM
Ketose-bisphosphate aldolase {ECO:0000313|EMBL:EFB74345.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
fructose-bisphosphate aldolase
L2_041_000G1_scaffold_721_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22077..23138
DNA (1062bp) protein (354aa)
Kinase, PfkB family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSG4_9FIRM
Kinase, PfkB family {ECO:0000313|EMBL:EFB74344.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
sugar kinase
L2_041_000G1_scaffold_721_22
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23462..24271
DNA (810bp) protein (270aa)
DNA-binding helix-turn-helix protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NR38_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDN01534.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
HipB; putative transcriptional regulator
L2_041_000G1_scaffold_721_23
unknown

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24417..24929
DNA (513bp) protein (171aa)

This feature has no annotations

L2_041_000G1_scaffold_721_24
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24926..26599
DNA (1674bp) protein (558aa)
YjeF family domain-containing protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDE4_9FIRM
YjeF family domain-containing protein {ECO:0000313|EMBL:EGJ46840.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
YjeF-like protein
L2_041_000G1_scaffold_721_25
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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27070..27672
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YDH3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13617.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L2_041_000G1_scaffold_721_26
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27705..28823
DNA (1119bp) protein (373aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDE6_9FIRM
L2_041_000G1_scaffold_721_27
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29051..29416
DNA (366bp) protein (122aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
mRNA interferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDE7_9FIRM
endoribonuclease
L2_041_000G1_scaffold_721_28
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29487..29999
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDE8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46844.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_041_000G1_scaffold_721_29
unknown

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comp(30005..30214)
DNA (210bp) protein (70aa)

This feature has no annotations

Displaying 29 items

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