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L2_041_000G1_scaffold_849

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_041_000G1_scaffold_849_1
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..873)
DNA (873bp) protein (291aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD04_9FIRM
putative isomerase
L2_041_000G1_scaffold_849_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1321..1632)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD05_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46701.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_041_000G1_scaffold_849_3
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2024..2560
DNA (537bp) protein (179aa)
hypothetical protein (EC:3.6.1.-)
ADP-ribose pyrophosphatase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE91_9FIRM
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:EGJ46391.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_041_000G1_scaffold_849_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2575..3294
DNA (720bp) protein (240aa)
Two-component system, OmpR family, response regulator VicR n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE92_9FIRM
Two-component system, OmpR family, response regulator VicR {ECO:0000313|EMBL:EGJ46392.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
OmpR family two-component response regulator
L2_041_000G1_scaffold_849_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3668..5449
DNA (1782bp) protein (594aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
two-component histidine kinase (EC:2.7.13.3)
Two-component system, OmpR family, sensor histidine kinase VicK n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE93_9FIRM
L2_041_000G1_scaffold_849_6
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5433..6749
DNA (1317bp) protein (439aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE94_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46394.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_041_000G1_scaffold_849_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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6756..7601
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE95_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46395.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_041_000G1_scaffold_849_8
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7692..8366
DNA (675bp) protein (225aa)
Translation initiation factor IF-3 n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CAS4_9FIRM
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
infC; translation initiation factor IF-3
L2_041_000G1_scaffold_849_9
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8388..8591
DNA (204bp) protein (68aa)
50S ribosomal protein L35 n=3 Tax=Clostridiales RepID=G9YMM8_9FIRM
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
LSU ribosomal protein L35P
L2_041_000G1_scaffold_849_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


8612..8968
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCU7_9FIRM
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
LSU ribosomal protein L20P
L2_041_000G1_scaffold_849_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9107..10477)
DNA (1371bp) protein (457aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEU0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45960.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
glutamine amidotransferase-like protein
L2_041_000G1_scaffold_849_12
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10776..11615)
DNA (840bp) protein (280aa)
Oxidoreductase, aldo/keto reductase family protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NPD6_9FIRM
Oxidoreductase, aldo/keto reductase family protein {ECO:0000313|EMBL:EDN02018.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Aldo/keto reductases, related to diketogulonate reductase
L2_041_000G1_scaffold_849_13
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12052..13455
DNA (1404bp) protein (468aa)
Transporter, UIT6 family (TC 9.B.53) n=2 Tax=Clostridiales RepID=D7GRC0_9FIRM
transporter, UIT6 family (TC 9.B.53)
Transporter UIT6 family (TC 9.B.53) {ECO:0000313|EMBL:CCY12417.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
L2_041_000G1_scaffold_849_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13472..14488
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFE3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99501.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L2_041_000G1_scaffold_849_15
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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14866..15741
DNA (876bp) protein (292aa)
Dipicolinic acid synthetase, A subunit n=1 Tax=Firmicutes bacterium ASF500 RepID=V2Y7F0_9FIRM
Dipicolinic acid synthetase, A subunit {ECO:0000313|EMBL:ESL12338.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
shikimate/quinate 5-dehydrogenase
L2_041_000G1_scaffold_849_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15765..16346
DNA (582bp) protein (194aa)
Dipicolinic acid synthetase, B subunit n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEU2_9FIRM
Dipicolinic acid synthetase, B subunit {ECO:0000313|EMBL:EGJ45962.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
dipicolinic acid synthetase subunit B
L2_041_000G1_scaffold_849_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16443..17435)
DNA (993bp) protein (331aa)
birA; transcriptional regulator/biotin--[acetyl-CoA-carboxylase] ligase (EC:6.3.4.15)
Biotin-[acetyl-CoA-carboxylase] ligase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEV7_9FIRM
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_041_000G1_scaffold_849_18
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17628..17996
DNA (369bp) protein (123aa)
Lactoylglutathione lyase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFD9_9FIRM
Lactoylglutathione lyase {ECO:0000313|EMBL:EGJ46159.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Glyoxalase/bleomycin resistance protein/dioxygenase
L2_041_000G1_scaffold_849_19
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17996..19045
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P1P2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM97934.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L2_041_000G1_scaffold_849_20
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19157..19645
DNA (489bp) protein (163aa)
DNA-binding helix-turn-helix protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NZN1_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDM98880.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
DNA-binding protein
L2_041_000G1_scaffold_849_21
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19714..20661)
DNA (948bp) protein (316aa)
Efflux ABC transporter, permease protein n=2 Tax=Oscillibacter RepID=U2QRN3_9FIRM
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:ERK65580.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L2_041_000G1_scaffold_849_22
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20658..22397)
DNA (1740bp) protein (580aa)
Efflux ABC transporter, permease protein n=2 Tax=Oscillibacter RepID=U2QRN3_9FIRM
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:ERK65580.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L2_041_000G1_scaffold_849_23
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22411..23079)
DNA (669bp) protein (223aa)
ABC transporter ATP-binding protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBF3_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EGJ47681.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ABC transporter ATP-binding protein
L2_041_000G1_scaffold_849_24
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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23232..23720
DNA (489bp) protein (163aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IMH3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI57592.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
Predicted transcriptional regulators
L2_041_000G1_scaffold_849_25
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23855..25534)
DNA (1680bp) protein (560aa)
recombinase n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003627A73
Recombinase {ECO:0000313|EMBL:EGD49779.1}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
recombinase
L2_041_000G1_scaffold_849_26
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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comp(25605..25883)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D102_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA81445.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
L2_041_000G1_scaffold_849_27
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25932..26060)
DNA (129bp) protein (43aa)
Relaxase/mobilization nuclease domain protein n=2 Tax=Oscillibacter RepID=U2R148_9FIRM
Relaxase/mobilization nuclease domain protein {ECO:0000313|EMBL:ERK62561.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L2_041_000G1_scaffold_849_28
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(26060..26359)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5ARQ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX46040.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
Displaying 28 items

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