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L2_041_000G1_scaffold_2013

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_041_000G1_scaffold_2013_1
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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397..798
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NY18_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM99188.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L2_041_000G1_scaffold_2013_2
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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791..991
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NY17_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM99187.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L2_041_000G1_scaffold_2013_3
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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1102..1287
DNA (186bp) protein (62aa)
Excisionase family DNA binding domain-containing protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CDT0_9FIRM
Excisionase family DNA binding domain-containing protein {ECO:0000313|EMBL:EHO33473.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Excisionase from transposon Tn916.
L2_041_000G1_scaffold_2013_4
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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1370..2623
DNA (1254bp) protein (418aa)
Site-specific recombinase, phage integrase family n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NY15_9FIRM
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EDM99185.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Site-specific recombinase XerD
L2_041_000G1_scaffold_2013_5
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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3101..3307
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YJF3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL15717.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L2_041_000G1_scaffold_2013_6
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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3560..4468
DNA (909bp) protein (303aa)
Phosphate binding protein n=2 Tax=Oscillibacter RepID=U2QCZ6_9FIRM
Phosphate binding protein {ECO:0000313|EMBL:ERK64150.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
pstS; phosphate ABC transporter phosphate-binding protein
L2_041_000G1_scaffold_2013_7
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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4603..5535
DNA (933bp) protein (311aa)
Phosphate ABC transporter, permease protein PstC n=2 Tax=Oscillibacter RepID=U2QVZ8_9FIRM
Phosphate ABC transporter, permease protein PstC {ECO:0000313|EMBL:ERK64152.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
pstC; phosphate ABC transporter permease protein
L2_041_000G1_scaffold_2013_8
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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5539..6390
DNA (852bp) protein (284aa)
Phosphate ABC transporter, permease protein PstA n=2 Tax=Oscillibacter RepID=U2SDD7_9FIRM
Phosphate ABC transporter, permease protein PstA {ECO:0000313|EMBL:ERK64153.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
pstA; phosphate ABC transporter permease protein
L2_041_000G1_scaffold_2013_9
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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6455..7210
DNA (756bp) protein (252aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
pstB; phosphate ABC transporter ATP-binding protein (EC:3.6.3.27)
Phosphate ABC transporter, ATP-binding protein n=2 Tax=Oscillibacter RepID=U2R6J2_9FIRM
L2_041_000G1_scaffold_2013_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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7210..7851
DNA (642bp) protein (214aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCH2_9FIRM
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
phoU; phosphate transport system protein PhoU
L2_041_000G1_scaffold_2013_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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7926..8627
DNA (702bp) protein (234aa)
Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCH1_9FIRM
Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP {ECO:0000313|EMBL:EGJ48282.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
OmpR family two-component response regulator
L2_041_000G1_scaffold_2013_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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8637..10298
DNA (1662bp) protein (554aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative two-component histidine kinase (EC:2.7.13.3)
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCH0_9FIRM
L2_041_000G1_scaffold_2013_13
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10387..10899
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCG9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48280.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_041_000G1_scaffold_2013_14
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10988..12361)
DNA (1374bp) protein (458aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000256|HAMAP-Rule:MF_00046}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
murC; UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAW6_9FIRM
L2_041_000G1_scaffold_2013_15
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12582..12707
DNA (126bp) protein (42aa)
Uncharacterized protein n=1 Tax=Youngiibacter fragilis 232.1 RepID=V7I908_9CLOT
putative Xre family DNA-binding protein
DNA-binding protein {ECO:0000313|EMBL:EEG94989.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Displaying 15 items

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