ggKbase home page

L2_041_000G1_scaffold_2670

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_041_000G1_scaffold_2670_1
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(68..859)
DNA (792bp) protein (264aa)
ZIP family zinc transporter n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC82_9FIRM
ZIP family zinc transporter {ECO:0000313|EMBL:EGJ48116.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
zinc/iron permease
L2_041_000G1_scaffold_2670_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1072..1788
DNA (717bp) protein (239aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
pyrH; uridylate kinase (EC:2.7.4.22)
Uridylate kinase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC81_9FIRM
L2_041_000G1_scaffold_2670_3
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1826..2380
DNA (555bp) protein (185aa)
Ribosome-recycling factor n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC80_9FIRM
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
frr; ribosome recycling factor
L2_041_000G1_scaffold_2670_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2463..3212
DNA (750bp) protein (250aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
uppS; undecaprenyl pyrophosphate synthetase (EC:2.5.1.31)
Isoprenyl transferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC79_9FIRM
L2_041_000G1_scaffold_2670_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3213..4031
DNA (819bp) protein (273aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Phosphatidate cytidylyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC78_9FIRM
cdsA; phosphatidate cytidylyltransferase
L2_041_000G1_scaffold_2670_6
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4270..5412
DNA (1143bp) protein (381aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC77_9FIRM
L2_041_000G1_scaffold_2670_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5450..6520
DNA (1071bp) protein (357aa)
putative M50B family peptidase (EC:3.4.24.-)
RIP metalloprotease RseP n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC76_9FIRM
RIP metalloprotease RseP {ECO:0000313|EMBL:EGJ48110.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_041_000G1_scaffold_2670_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6593..7630
DNA (1038bp) protein (346aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ispG; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC:1.17.4.3)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC75_9FIRM
L2_041_000G1_scaffold_2670_9
Carnobacterium maltaromaticum, Carnobacterium, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7644..8117
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Carnobacterium maltaromaticum LMA28 RepID=K8E2Z6_CARML
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO10424.2}; TaxID=1234679 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Carnobacteriaceae; Carnobacterium.;" source="Carnobacterium maltaromaticum LMA28.;"
L2_041_000G1_scaffold_2670_10
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8657..9079
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TY43_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC72836.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
hypothetical protein
L2_041_000G1_scaffold_2670_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9107..9853
DNA (747bp) protein (249aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
polC; DNA polymerase III PolC-type (EC:2.7.7.7)
DNA polymerase III polC-type n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC74_9FIRM
Displaying 11 items

View Taxonomy